DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG1316 and CG5213

Sequence 1:NP_647887.1 Gene:CG1316 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_650473.1 Gene:CG5213 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster

Alignment Length:224 Identity:58/225 (26%)
Similarity:91/225 (40%) Gaps:32/225 (14%)


  Fly    22 DDDPPMSRLFIICN-------KAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTS 79
            |..||:..|.:..|       :..||.:....||.:|||....:::.:.|..:....:|.:....
  Fly    29 DPPPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSER 93

  Fly    80 DAAKAQEEMNG-KTIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFI-VIPKTATEEDIREEF 142
            .||.|...|:| :|.||   .|||..|......|..|.        |:: .:|....|:.:||.|
  Fly    94 QAAAAVNGMDGYETRGK---RLKVAFARPSEYESTSSS--------LYVGNLPTYMDEKKVRELF 147

  Fly   143 SQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVA--------FENCS--AKYKAVFAEPKGS 197
            :.:|::..|.:::.|.|...:|..:::|.....|.||        .|..|  ...|.|..|.|||
  Fly   148 ATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGS 212

  Fly   198 TRTQR-DQY-GRPSEDNPLYSSSGRGNSN 224
            :.|.. .|| .:.....|.|....|.|.:
  Fly   213 SSTSSGSQYKDKRKSSPPPYKRRERTNDH 241

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 24/88 (27%)
RRM2_RBM45 122..195 CDD:240813 20/84 (24%)
RRM3_RBM45 267..339 CDD:240814
RRM4_RBM45 383..449 CDD:240815
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821 21/79 (27%)
RRM 128..202 CDD:214636 17/82 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C69017898
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
10.930

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