DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG1316 and CG4612

Sequence 1:NP_647887.1 Gene:CG1316 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001246493.1 Gene:CG4612 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster

Alignment Length:204 Identity:52/205 (25%)
Similarity:83/205 (40%) Gaps:62/205 (30%)


  Fly     8 SRSGGGRGGQEYSNDDDPPMSRLFI------ICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQE 66
            |.|.||.||     :..|...:::|      |.|||     ..:.||.:|.|.:..|.||: ...
  Fly    98 SGSTGGSGG-----NSSPDSGKIYIKNLERSIDNKA-----VYDTFSVFGNILNCNVAKDE-DGN 151

  Fly    67 NKGIAYVKFSKTSDAAKAQEEMNG-----------KTIGKMDRTLKVLVAANRNQGSNKSENEQE 120
            ::|..:|.|.....|..|.|::||           |.|.:.||                   |||
  Fly   152 SRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDR-------------------EQE 197

  Fly   121 K---YVRLFIV-IPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFE 181
            |   :..|::. :.:..||:.:||.|..:|.:.|..::.:: .|..:.||:          ||:|
  Fly   198 KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDE-EGRSRRFGF----------VAYE 251

  Fly   182 NCSAKYKAV 190
            |..:...||
  Fly   252 NPQSALAAV 260

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 25/97 (26%)
RRM2_RBM45 122..195 CDD:240813 17/71 (24%)
RRM3_RBM45 267..339 CDD:240814
RRM4_RBM45 383..449 CDD:240815
CG4612NP_001246493.1 RRM2_I_PABPs 115..185 CDD:240825 20/76 (26%)
RRM3_I_PABPs 202..282 CDD:240826 17/71 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C70750984
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
10.930

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