DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and Rbp9

DIOPT Version :10

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:372 Identity:82/372 - (22%)
Similarity:161/372 - (43%) Gaps:51/372 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SNDDDPPMSRLFIICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKA 84
            :|:.||..:.:.....:..::::.|..|..:||:|...:::||.|.::.|..:|.:.|..||.||
  Fly   103 NNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167

  Fly    85 QEEMNGKTIGKMDRTLKVLVAANRNQGSNKSENEQEKYVRLFIV-IPKTATEEDIREEFSQWGDV 148
            ...:||..:  .::|:||.:|        :..:|..|...|::. :||..|:.|:...||.:|.:
  Fly   168 INALNGLRL--QNKTIKVSIA--------RPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKI 222

  Fly   149 ESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRTQRDQYGRPSEDN- 212
            .:..|:.:...|..||.|::||.:.:.|..|.:..:.      ..||.||.....::......| 
  Fly   223 ITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG------TTPKNSTEPITVKFANNPSSNK 281

  Fly   213 -----------PLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQ--------NNDMAAFLRM 258
                       |..:..||........|:::....:..:.|....|.        .:|:.....:
  Fly   282 NSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMI 346

  Fly   259 QNVPVAQPS-CLEV-NVSNCVNQDQLWRLFDIIPGLDYCQIMREHGPRTNE----ALVVYDNPEA 317
            |...:|... |:.| |::....::.||:||.....:...:::|:  .::|:    ..|...|.|.
  Fly   347 QGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRD--LQSNKCKGFGFVTMTNYEE 409

  Fly   318 AIYAKDKLHGLEYPMGERIIVKVNGMSSARMDTSFIDKRTKKDAICN 364
            |:.|...|:|  |.:|.|:: :|:..::....| .:   ||..|:.|
  Fly   410 AVLAIQSLNG--YTLGNRVL-QVSFKTNKNKQTXLL---TKLAAVVN 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:409801 21/79 (27%)
RRM_SF 122..195 CDD:473069 17/73 (23%)
RRM3_RBM45 267..339 CDD:409803 19/77 (25%)
RRM4_RBM45 383..449 CDD:409804
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 76/351 (22%)
Blue background indicates that the domain is not in the aligned region.

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