DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG1316 and fne

Sequence 1:NP_647887.1 Gene:CG1316 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001096965.1 Gene:fne FlyBaseID:FBgn0086675 Length:356 Species:Drosophila melanogaster

Alignment Length:407 Identity:86/408 (21%)
Similarity:155/408 (38%) Gaps:118/408 (29%)


  Fly     9 RSGGGRGGQEYSNDDDPPMSRLFIICN---KAHTEEDFREAFSPYGEIEDIWVVKDK-------- 62
            ::|...|..:.|||:    ||..:|.|   :..|:|:.|..||..||:|...:|:||        
  Fly     9 KNGSANGSVDGSNDE----SRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLP 69

  Fly    63 ----------HTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAANRNQGSNKSEN 117
                      ...::.|..:|.:.:..||.||...:||..:  .::.:||..|        :..:
  Fly    70 ASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRL--QNKVIKVSYA--------RPSS 124

  Fly   118 EQEKYVRLFIV-IPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPKGFGYVRFTKFYYAAVAFE 181
            |..|...|::. :||..::.|:...|:.:|.:.:..|:.:..:|..||.|::||.:...|..|.:
  Fly   125 ESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQ 189

  Fly   182 NCSAKYKAVFAE---------------------------PKGSTRTQRDQYGRPSEDNPLYSSSG 219
            ..:.|....:||                           |:.:..|:|.....||.....||...
  Fly   190 ELNGKTPKGYAEPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLA 254

  Fly   220 RGNSNFNG---GGSSSGGGGSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSCLEV-NVSNCVNQD 280
             |:...|.   |.:.:|.|        |                       |:.| |::....::
  Fly   255 -GDLLANSILPGNAMTGSG--------W-----------------------CIFVYNLAPETEEN 287

  Fly   281 QLWRLFDIIPGLDYCQIMREHGPRTNE----ALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVN 341
            .||:||.....:...:::|:  .:|::    ..|...|.:.|:.|...|:|  |.:|.|:     
  Fly   288 VLWQLFGPFGAVQSVKVIRD--LQTSKCKGFGFVTMTNYDEAVVAIQSLNG--YTLGNRV----- 343

  Fly   342 GMSSARMDTSFIDKRTK 358
                  :..||...:||
  Fly   344 ------LQVSFKTNKTK 354

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 25/101 (25%)
RRM2_RBM45 122..195 CDD:240813 19/101 (19%)
RRM3_RBM45 267..339 CDD:240814 18/77 (23%)
RRM4_RBM45 383..449 CDD:240815
fneNP_001096965.1 RRM 23..354 CDD:330708 80/392 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C69449137
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10352
RoundUp 00.000 Not matched by this tool.
22.030

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