DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and Spx

DIOPT Version :10

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_511058.1 Gene:Spx / 31558 FlyBaseID:FBgn0015818 Length:347 Species:Drosophila melanogaster


Alignment Length:149 Identity:37/149 - (24%)
Similarity:64/149 - (42%) Gaps:19/149 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 EAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNG-KTIGKMDRTLKVLV-AAN 107
            |.|...|.:.::.:.||:.||.::|..:|:|....||....:.||. |..||..|..|... ..|
  Fly    31 ELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKN 95

  Fly   108 RNQGSNKSENEQEKYVRLFIVIPKTATEED---IREEFSQWGDV-ESVTIVKEKNNGNPKGFGYV 168
            .:.|:|             |.|.....|.|   :.:.||.:|.: ::..|:::...|..|.|.::
  Fly    96 LDVGAN-------------IFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFI 147

  Fly   169 RFTKFYYAAVAFENCSAKY 187
            .|..|..:..|.:..:.:|
  Fly   148 NFASFEASDAAMDAMNGQY 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:409801 19/61 (31%)
RRM_SF 122..195 CDD:473069 15/70 (21%)
RRM3_RBM45 267..339 CDD:409803
RRM4_RBM45 383..449 CDD:409804
SpxNP_511058.1 RRM1_SF3B4 15..88 CDD:409771 18/56 (32%)
RRM2_SF3B4 99..181 CDD:409772 17/81 (21%)
Blue background indicates that the domain is not in the aligned region.

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