DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: CG1316 and eIF3g1

Sequence 1:NP_647887.1 Gene:CG1316 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_570011.1 Gene:eIF3g1 FlyBaseID:FBgn0029629 Length:269 Species:Drosophila melanogaster

Alignment Length:85 Identity:29/86 (34%)
Similarity:42/86 (49%) Gaps:7/86 (8%)


  Fly     6 SQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPYGEIEDIWVVKDKHTQENKGI 70
            ||..:.|.||      .||....|:..: :::.||.|..|.....|....:::.:||:|...||.
  Fly   174 SQKGALGMRG------RDDTAAIRISNL-SESMTEADLEELVKKIGPQSKMYLARDKNTGLCKGF 231

  Fly    71 AYVKFSKTSDAAKAQEEMNG 90
            |||.|.:..|||.|.|.:||
  Fly   232 AYVHFKQRKDAAAAIEILNG 251

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 22/67 (33%)
RRM2_RBM45 122..195 CDD:240813
RRM3_RBM45 267..339 CDD:240814
RRM4_RBM45 383..449 CDD:240815
eIF3g1NP_570011.1 eIF3g 30..140 CDD:289149
RRM <161..>269 CDD:223796 29/86 (34%)
RRM_eIF3G_like 189..265 CDD:240854 22/65 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10352
RoundUp 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.