DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG1316 and elav

Sequence 1:NP_647887.1 Gene:CG1316 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001245447.1 Gene:elav FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster

Alignment Length:398 Identity:90/399 (23%)
Similarity:160/399 (40%) Gaps:113/399 (28%)


  Fly     5 RSQSRSGG--GRGGQEYSNDDDPPMSRLFI-ICNKAHTEEDFREAFSPYGEIEDIWVVKDK---- 62
            ::|..:.|  |.|.|..||......:.|.: ...:..||::.|..||..||||.:.:::||    
  Fly   124 QAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVY 188

  Fly    63 ---------HTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAANRNQGSNKSENE 118
                     ...::.|..:|.:.:..||.:|...:||..:  .::|:||..|        :..::
  Fly   189 IDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRL--QNKTIKVSFA--------RPSSD 243

  Fly   119 QEKYVRLFIV-IPKTATEEDIREEFSQWGDVESVTIVKEKNNGN---PKGFGYVRFTKFYYAAVA 179
            ..|...|::. :|||.|::::...|:.:|.:.:..|:  :|.||   .||.|::||.|...|..|
  Fly   244 AIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRIL--QNAGNDTQTKGVGFIRFDKREEATRA 306

  Fly   180 F--------ENCSAKYKAVFAEPKGSTRTQRDQYGRPSEDNP---------LYSSSGRGNSNF-- 225
            .        .:|:......|:...||| ::..|...|:..||         :::...:|.:.|  
  Fly   307 IIALNGTTPSSCTDPIVVKFSNTPGST-SKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSP 370

  Fly   226 -----------NGGGS--------SSGGGGSNSYNNDWNVSQNNDMAAFLRMQNVPVAQPSCLEV 271
                       ||.|:        :||.||                           |.|..: .
  Fly   371 MAGDMLDVMLPNGLGAAAAAATTLASGPGG---------------------------AYPIFI-Y 407

  Fly   272 NVSNCVNQDQLWRLFDIIPGLDYCQIMREHGPRTNE-------ALVVYDNPEAAIYAKDKLHGLE 329
            |::....:..||:||.....:...:|:::  |.||:       ::..||....||.|   |:|  
  Fly   408 NLAPETEEAALWQLFGPFGAVQSVKIVKD--PTTNQCKGYGFVSMTNYDEAAMAIRA---LNG-- 465

  Fly   330 YPMGERII 337
            |.||.|::
  Fly   466 YTMGNRVL 473

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:240812 22/94 (23%)
RRM2_RBM45 122..195 CDD:240813 21/85 (25%)
RRM3_RBM45 267..339 CDD:240814 20/79 (25%)
RRM4_RBM45 383..449 CDD:240815
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 83/377 (22%)
RRM1_Hu 148..238 CDD:241094 22/92 (24%)
RRM2_Hu 248..327 CDD:241096 21/81 (26%)
RRM3_Hu 402..478 CDD:240823 21/81 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10352
RoundUp 00.000 Not matched by this tool.
11.100

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