DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sqor and Sqor

DIOPT Version :10

Sequence 1:NP_647877.1 Gene:Sqor / 38514 FlyBaseID:FBgn0035515 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001041378.2 Gene:Sqor / 691966 RGDID:1564504 Length:450 Species:Rattus norvegicus


Alignment Length:438 Identity:218/438 - (49%)
Similarity:295/438 - (67%) Gaps:16/438 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVGGGTGGCAMAAKLSSRLGSDKVVVLEPEDK 79
            |.|.|....|....|....|::.:.|     |||:|||:||..||.::..|:|::.|.::||.::
  Rat    20 LRLGTQQAGPLQLHTGACCTAKNHYE-----VLVLGGGSGGITMATRMKRRVGAENVAIVEPSER 79

  Fly    80 HYYQPMFTLIGGGMKRLDQSHRQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIA 144
            |:|||::||:|.|.|.|..|.|....|:|:..:|::::..|.:||.|.:.|..||.|.|.:||||
  Rat    80 HFYQPIWTLVGAGAKELSSSDRSTLSVIPSGVQWIQDRVAELNPDQNCIRTDNGKEISYRYLIIA 144

  Fly   145 TGLQLNYGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCPIKCAGAPQK 209
            .|:||:|.||.||.|....|  .:.|.||.|.|:..::.|:...:|||:|||||.|:||||||||
  Rat   145 LGIQLDYEKIKGLPEGFAYP--KIGSNYSVKTVEKTWKALQDFKEGNALFTFPNTPVKCAGAPQK 207

  Fly   210 IAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMKLIKRRNITLNVQRNLVEVRHKDNI 274
            |.|:||.||||.|:|...|||:||:|..|||||.||:||.::|:.||:::|.:.||:|||.....
  Rat   208 IMYLSEAYFRKTGKRSKANIIFNTALGTIFGVKKYADALQEIIRERNVSVNYKHNLIEVRADKQE 272

  Fly   275 AVFEDLAKPG----VHYEETYSMLHVTPPMSTPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVF 335
            ||||:|.|||    :|||    |||||||||:|||:.. ..:....|:||||:.||||.||.|||
  Rat   273 AVFENLDKPGETHVIHYE----MLHVTPPMSSPDVLKR-SPVADSAGWVDVDKETLQHKKYPNVF 332

  Fly   336 AIGDSASSPNSKTAAAAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL 400
            .|||..:.|.||||||.||||.::.:.:...::.:.||..||||:|||:||||:..|||||||..
  Rat   333 GIGDCTNLPTSKTAAAVAAQSGILDRTISLIMKNQTPTKKYDGYTSCPLVTGYNRVILAEFDYTA 397

  Fly   401 TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIF 448
            .|:||||.||||||.||:.||.::||.|||.:|:.|||.|||.:||:|
  Rat   398 QPLETFPFDQSKERISMYLMKADMMPFLYWNMMLRGYWGGPAFLRKLF 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SqorNP_647877.1 FadH2 65..387 CDD:440215 161/325 (50%)
SqorNP_001041378.2 FadH2 71..389 CDD:440215 158/321 (49%)

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