DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14968 and ldlrap1a

DIOPT Version :10

Sequence 1:NP_647800.1 Gene:CG14968 / 38406 FlyBaseID:FBgn0035431 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_945331.1 Gene:ldlrap1a / 368278 ZFINID:ZDB-GENE-030328-13 Length:287 Species:Danio rerio


Alignment Length:187 Identity:49/187 - (26%)
Similarity:84/187 - (44%) Gaps:20/187 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ITFKVKYIGSEVARGLWGIKYTRRPVDIMVGVAKNLPPNKVLPNCELKVSTDGVQL-EIISPKAS 85
            :||.::::|..:.....|.:.:...|..:|..||  ...|.||...||||..|:.| :.:|.:..
Zfish    45 MTFNLRHLGMTLVDQPKGEELSAAAVKRIVATAK--ASGKKLPKVALKVSPQGIILYDSVSNQLI 107

  Fly    86 INHWSYPIDTISYGVQDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQ-- 148
            .|   ..|..|||...|..:.:|||.|....::  ...|.|||:|..|.:|:.:|..:|.||:  
Zfish   108 EN---ISIYRISYCTADKTHDKVFAFIAQNQQN--ETLECHAFLCAKRKVAKAVTLTVAQAFRVA 167

  Fly   149 ----DYSRRVK--EATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEA 199
                :.::..|  ::.||....:....:::.|..|  :.....|.:.  |:|..|.|
Zfish   168 FEFWEVAKDEKKWDSAGETSNSSQSDRSVSLTSLK--VGAAATENLL--EIEDYTSA 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14968NP_647800.1 PTB_LDLRAP_insect-like 23..147 CDD:269982 37/124 (30%)
ldlrap1aNP_945331.1 PTB_LDLRAP-mammal-like 43..165 CDD:269981 38/126 (30%)

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