DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and glb-33

DIOPT Version :10

Sequence 1:NP_647758.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001300285.1 Gene:glb-33 / 178627 WormBaseID:WBGene00022284 Length:546 Species:Caenorhabditis elegans


Alignment Length:351 Identity:83/351 - (23%)
Similarity:158/351 - (45%) Gaps:51/351 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 PHYEDLGLDPDPNWTRICEDVYNPLLENNRIEFWVCGVLIN--------IVGVLGILGNIISMII 137
            |.||:.. ||..|:: :|   |.||.:.....|   .|::|        :.|.:|.|..:.|:.:
 Worm    14 PLYEEHD-DPYINYS-LC---YTPLHDETYKTF---SVILNGYITTGVILFGTIGNLNGVKSVHV 70

  Fly   138 LSRPQMRSSINYL-LTGLARCDTVLIITSILLFGIPSIYPYTGHFFGYYNYVYPFISPAVFPIGM 201
            .|..:.|..:..: :..||..||||:.::...:|...:......:....|.:.|:.    ..:..
 Worm    71 TSLDKNRGVVLAVSMLALAFWDTVLLWSAFFYYGAKKLNVLNNLYLDRLNTIIPYF----HALSH 131

  Fly   202 IAQTASIYMTFTVTLERYVAVCHPLKARALCTYGRA-----KIYFIVCVCF-------------S 248
            :|.||||:....:|::|::|...|.:........::     :|.||.|..:             :
 Worm   132 VANTASIWCVVAITIQRFMATRDPFRTSRTTVIVQSFRTERRISFIYCATYRRLFKMPLYVSLCA 196

  Fly   249 LAYNMPRFWEVLTVTYPEPGKDVILHCVRPSRLRRSETYINIYIHWCYLIVNYIIPFLTLAILNC 313
            |.:|:|.|:|:.:.:......:..|..:.|:|| |:..|..:|.....:::..:.|.:.:..::.
 Worm   197 LLFNLPAFFEIRSKSCFNRDTNETLVTLSPTRL-RTNPYFTVYRVCSRMLMVSVGPNILIVCISA 260

  Fly   314 LIYRQVKRANRERQR--------LSRSEKREIGLATML-LCVVIVFFMLNFLPLVLNISEAFYST 369
            |....::.:||.|::        |.|...|| .:.||: :.:|:.|.:...|...|:|.|.....
 Worm   261 LTLWFLRGSNRSRRQLFQMTDNLLERYASRE-SMNTMISVMLVVKFILFRSLTFFLDIMEVTVVM 324

  Fly   370 ID-HKITKISNLLITINSSVNFLIYI 394
            :| :.|..|||:||.:||:.|.|||:
 Worm   325 MDNYYIIDISNILILVNSATNCLIYL 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_647758.1 7tmA_FMRFamide_R-like 114..404 CDD:410630 72/318 (23%)
TM helix 1 115..141 CDD:410630 7/33 (21%)
TM helix 2 147..172 CDD:410630 7/25 (28%)
TM helix 3 193..223 CDD:410630 8/29 (28%)
TM helix 4 235..255 CDD:410630 6/37 (16%)
TM helix 5 289..314 CDD:410630 2/24 (8%)
TM helix 6 334..362 CDD:410630 8/28 (29%)
TM helix 7 372..397 CDD:410630 12/23 (52%)
glb-33NP_001300285.1 7tmA_FMRFamide_R-like 44..366 CDD:410630 71/313 (23%)
TM helix 1 45..71 CDD:410630 5/25 (20%)
TM helix 2 81..106 CDD:410630 7/24 (29%)
TM helix 3 123..153 CDD:410630 9/33 (27%)
TM helix 4 183..203 CDD:410630 2/19 (11%)
TM helix 5 236..261 CDD:410630 2/24 (8%)
TM helix 6 289..319 CDD:410630 9/30 (30%)
TM helix 7 328..357 CDD:410630 12/23 (52%)
Mb-like 386..531 CDD:381254
Blue background indicates that the domain is not in the aligned region.

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