DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Non2 and smarcd3

DIOPT Version :9

Sequence 1:NP_647745.1 Gene:Non2 / 38341 FlyBaseID:FBgn0035370 Length:244 Species:Drosophila melanogaster
Sequence 2:XP_031759797.1 Gene:smarcd3 / 100495941 XenbaseID:XB-GENE-494884 Length:341 Species:Xenopus tropicalis


Alignment Length:155 Identity:31/155 - (20%)
Similarity:52/155 - (33%) Gaps:49/155 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 EEEDPSSSEEEAAKKKKQSPKKRPQPTKHKAPKKK-----------------RKTLNADDSGTES 133
            ::..|:.....:||::|.:.|..||..:...|:.:                 ||.::..      
 Frog   112 QQATPTQGRSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRIDIQ------ 170

  Fly   134 DAGSDSDYEVVKKPAAKKK------------AKAAGGTGSGRKSTGFTRAYNLSPELSALMGESS 186
                    |.:|:|..:|:            |||     ....|.|...::.|..|...|...|.
 Frog   171 --------EALKRPMKQKRKLRLYISNTFNPAKA-----DADDSDGSIASWELRVEGKLLDDPSK 222

  Fly   187 LPR-HEVVKKVWAIIKERDLYDPKN 210
            :.| .....|...|..::|||.|.|
 Frog   223 MKRKFSSFFKSLVIELDKDLYGPDN 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Non2NP_647745.1 DEK_C 7..57 CDD:285919
SWIB 170..242 CDD:280380 12/42 (29%)
smarcd3XP_031759797.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1401
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.