DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and SHA1

DIOPT Version :9

Sequence 1:NP_001163328.1 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:NP_001331890.1 Gene:SHA1 / 836498 AraportID:AT5G63780 Length:367 Species:Arabidopsis thaliana


Alignment Length:194 Identity:39/194 - (20%)
Similarity:61/194 - (31%) Gaps:48/194 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSY------SF 60
            :|:..|       .:...|..|...|.|...:..:|..|.:.|........||:|.:      :.
plant   121 NDIEMG-------IQQHQDALLELGCSCKNELALVHYACALKWFLNHGSTVCEICGHPAENIKTA 178

  Fly    61 SFQPIY---------------APDMPRVLPIK--------DVLVGLMSAVLEGARCWLHYTLVGL 102
            .|..:.               ..|...|||:.        :|.|.....:.|..           
plant   179 DFNKVVIALRDYTAIRERTADGGDQIPVLPVNTDSTIDSDEVAVIRRQRLSEIT----------- 232

  Fly   103 AWFGVVPLSAYRTYRYLFRASSFDMILTLPFDIFSVENLASD-AFRGCFVVTCTLLSFIGLVWL 165
            :|||...|:..........|.....:..:.|||..:||.|:. |..|..::..|.|..:.||||
plant   233 SWFGPHSLNNNNNNNSSVAAIPDQPLGVVNFDILPMENRATKWAVEGTGILLATGLLTVTLVWL 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_001163328.1 RINGv 9..56 CDD:128983 9/46 (20%)
DotA_TraY <737..913 CDD:275142
SHA1NP_001331890.1 RING_Ubox <135..169 CDD:418438 8/33 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.