DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and Marchf6

DIOPT Version :9

Sequence 1:NP_001163328.1 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:XP_008759048.1 Gene:Marchf6 / 294862 RGDID:1565757 Length:914 Species:Rattus norvegicus


Alignment Length:976 Identity:470/976 - (48%)
Similarity:622/976 - (63%) Gaps:106/976 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPIYA 67
            |.::.|||||||.|..|::||::||:||||||:|||:||:.|:::|.|||||||.:.|:|.|||:
  Rat     2 DTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYS 66

  Fly    68 PDMPRVLPIKDVLVGLMSAVLEGARCWLHYTLVGLAWFGVVPLSAYRTYRYLFRASSFDMILTLP 132
            ||||..|||:|:..||::::....|.|.|||||..||.|||||:|.|.|:.|| ..|...:||||
  Rat    67 PDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLF-TGSVSSLLTLP 130

  Fly   133 FDIFSVENLASDAFRGCFVVTCTLLSFIGLVWLREQILHGGGPDWLERDDAPLQAA--------- 188
            .|:.|.|||.:|..:|||||||||.:||.||||||||:|||.|.|||....|..||         
  Rat   131 LDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPV 195

  Fly   189 AANPAPDPAAEAAPQPQDDNNNADDNEAPAPADNDGQDAQAQ----------DAAPAAAAPVVDA 243
            ..|.|.:|||:....|..:|....:|.       |.||.||:          ||....||...:.
  Rat   196 GGNGAENPAADQPANPAGENAVLGENP-------DAQDGQAEEEEEDNEEEDDAGVEDAADANNG 253

  Fly   244 DADEQNWNPMEWDRAAEELTWERLLGLDGSLVFLEHVFWIISLNTMFIFTFAFCPYCVGNFILSS 308
            ..|:.|||.:|||||||||||||:|||||||||||||||::||||:||..||||||.:|:|.|..
  Rat   254 AQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVG 318

  Fly   309 MDLLQPEKPLLHFHGLITTLFGYCCIGLTLVVLHFFSRVFRLRRVCWFIGLCYIVVKVSLLSVLE 373
            :. .:......||.|||||:.||..:.:||::.|..:.:.:..|....:|:||||||||||.|:|
  Rat   319 LG-FEEHVQASHFEGLITTIVGYILLAITLIICHALATLVKFHRSRRLLGVCYIVVKVSLLVVVE 382

  Fly   374 IGVLPLICGWWLDICSLPLLDASLKDRKESFKAAPGTSLFVHWMFGMVYVYYFAAFVSLLREVLR 438
            |||.|||||||||||||.:.||:||||:.||::||||::|:||:.|||||:|||:|:.|||||||
  Rat   383 IGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLR 447

  Fly   439 PGVLWIFRNVNDPDFSPIQEMIHVPIVRHIRRLVASAMIFGFAVLLMLWLPIRILQVVCPDFLPY 503
            |||||..||:|||||:|:|||||:||.||:||.:.|.::||..|||||||||||::.:.|.||||
  Rat   448 PGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPHFLPY 512

  Fly   504 --ALSGD---SAVNLQLLLLQIVLPGFFEQTQTRIWLKGLLRIWCTAVAWLLGIRSYLLPAPEPE 563
              .|..|   |.::|:|||||:|||...||..||.|||||:|.|.....:||.:.||||      
  Rat   513 NVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLL------ 571

  Fly   564 PEIPAAGEEGVENAAGE--NENQEGEAADAAAQPPAPPPPPPPPVEPAPAPRNLAAAHQAIMQRD 626
                 ..:|..||:|.:  |.||.....:|                 .||...|.||||||:|:.
  Rat   572 -----GDQEESENSANQQVNNNQPARNNNA-----------------VPAGEGLHAAHQAILQQG 614

  Fly   627 APVGFQPYDKPSLFALRLCALLALMCLSIVCAAMLTLTVP-----VYIGRRLMLIWSSQPDEKAA 686
            .|||||||.:|..|.||:..|:..||::::.|:::.||:|     |:.||.||..|:        
  Rat   615 GPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPAFLFSVFAGRWLMSFWT-------- 671

  Fly   687 GAAAAEGAGEVVENLDPIDPEGARKNERLLRSHELYTAELGGYLCWIVCRVVAAVVTLLPQGRAA 751
            |.|                           :.||||||..|.|:||:..|.|..:|..:||||..
  Rat   672 GTA---------------------------KIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRV 709

  Fly   752 IVDKIKHWVRVALQYALPVLTLLGIFVLVPLLIGLLIELAVVIPLRVPLRKTPIHFLWEDWALGV 816
            |..|:|.|..:.::..:..:.|.|:   ||||:|||.||.:|.||||||.:||:.:.|:||||||
  Rat   710 IFQKVKEWSLMIMKTLIVAVLLAGV---VPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGV 771

  Fly   817 LYCKIAIALTMMGPDWHLKRALDRAYMDGLRDFDLKFVMRDLAVPVVTTIGLALAIPYVMAHMMF 881
            |:.||..|:|:|||.|.||..:::.|.:|:|:.||.:::|.||.||::.:.|:|.||||:|..:.
  Rat   772 LHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCIPYVIASGVV 836

  Fly   882 PIFLADAYAQHVVARLVYPVSFIVVGSICILLFQIDQLKKLYLSIKVDKYLVGQRLVNYEHRKKQ 946
            |:....|..|::|.|.:||...:||..:.||.||:.|.|:||..||.|||||||||||||.:..:
  Rat   837 PLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGK 901

  Fly   947 Q 947
            |
  Rat   902 Q 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_001163328.1 RINGv 9..56 CDD:128983 30/46 (65%)
DotA_TraY <737..913 CDD:275142 75/175 (43%)
Marchf6XP_008759048.1 RING_CH-C4HC3_MARCH6 8..57 CDD:319616 32/48 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350970
Domainoid 1 1.000 833 1.000 Domainoid score I59
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4301
Inparanoid 1 1.050 922 1.000 Inparanoid score I339
OMA 1 1.010 - - QHG55388
OrthoDB 1 1.010 - - D170933at2759
OrthoFinder 1 1.000 - - FOG0003180
OrthoInspector 1 1.000 - - oto97010
orthoMCL 1 0.900 - - OOG6_102767
Panther 1 1.100 - - LDO PTHR13145
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3077
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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