DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and Marchf2

DIOPT Version :9

Sequence 1:NP_001163328.1 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:NP_663461.2 Gene:Marchf2 / 224703 MGIID:1925915 Length:287 Species:Mus musculus


Alignment Length:151 Identity:44/151 - (29%)
Similarity:63/151 - (41%) Gaps:39/151 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPI 65
            :|..|....||:|. |......|..||.|||::..:|:.||..|:..|:..|||||...|:.:  
Mouse    55 LDSQSDCPFCRICH-EGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVE-- 116

  Fly    66 YAPDMPRVLP--IKD-----------------VLVGLMSAV-----LEGAR--CWLHYTL--VGL 102
               ..||.|.  :||                 |.:..::|:     |.||:  ..||..|  |||
Mouse   117 ---KRPRPLTEWLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSRLEAVGL 178

  Fly   103 -----AWFGVVPLSAYRTYRY 118
                 |.|.:..|....::||
Mouse   179 IALTIALFTIYVLWTLVSFRY 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_001163328.1 RINGv 9..56 CDD:128983 18/46 (39%)
DotA_TraY <737..913 CDD:275142
Marchf2NP_663461.2 RINGv 63..110 CDD:128983 19/47 (40%)
Vpu 173..>224 CDD:109608 9/27 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.