DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1317 and marc-3

DIOPT Version :9

Sequence 1:NP_001163328.1 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:NP_492502.2 Gene:marc-3 / 172767 WormBaseID:WBGene00007643 Length:431 Species:Caenorhabditis elegans


Alignment Length:310 Identity:61/310 - (19%)
Similarity:89/310 - (28%) Gaps:137/310 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ICRVCRC--------EAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPI 65
            :||:|.|        ..|...||..||.|:|::...|:.||..|:..:....||:|.::|.    
 Worm    12 VCRICMCGETSIPYLGQQAGEPLISPCKCSGTMGLFHRSCLEHWLTLTSTTNCEICKFAFK---- 72

  Fly    66 YAPDMPRVLPIKDVLVGLMSAVLEGA--------RCWLHYTLVGL----AWFGVV-----PLSAY 113
                      ||......:..:.:|.        ..::.:..|.|    |:|||.     .|.|.
 Worm    73 ----------IKQKSRNFIDYIRQGGYKKLQSNRNPFIDFAFVLLILPFAFFGVFMSVEGALYAG 127

  Fly   114 RTYRYLFRASSFDMILTLPFDIFSVENLASDAFRGCFVVTCTLLSFIGL---------------- 162
            |.|.|.|.....|....|     .|.|..|        :.|.|..|:.|                
 Worm   128 RKYHYAFENRDNDENGNL-----EVRNQTS--------LECALFLFVALLLFSAFITLVVSALWH 179

  Fly   163 ------VWL-------------REQILH--------GGG---------------------PDWLE 179
                  :|.             .||.:|        |||                     |:...
 Worm   180 HFRQYKIWQAKNKIMFVVDQLDAEQSMHFNPQWKKQGGGWKEKIAKFWGEIRRRPTRAYIPEIAR 244

  Fly   180 RDDAPLQAAAANPAPDPAAEAAP---------QPQDDNNNADD---NEAP 217
            .|..|:         :|....:|         .|..:|.:..|   ||.|
 Worm   245 NDSIPI---------EPVVGISPVLVANFNRTSPDSNNTHHHDESRNEIP 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_001163328.1 RINGv 9..56 CDD:128983 17/54 (31%)
DotA_TraY <737..913 CDD:275142
marc-3NP_492502.2 RING_Ubox 12..71 CDD:388418 18/58 (31%)
RING-CH finger (C4HC3-type) 13..67 CDD:319361 17/53 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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