DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1317 and marchf6

DIOPT Version :9

Sequence 1:NP_001163328.1 Gene:CG1317 / 38300 FlyBaseID:FBgn0035333 Length:988 Species:Drosophila melanogaster
Sequence 2:XP_002938364.3 Gene:marchf6 / 100494185 XenbaseID:XB-GENE-5888572 Length:910 Species:Xenopus tropicalis


Alignment Length:989 Identity:476/989 - (48%)
Similarity:633/989 - (64%) Gaps:111/989 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKEYCELCSYSFSFQPI 65
            |:...:.|||||||.|...::||::||:||||||:|||:||:||:::|.|||||||.:.|:|.||
 Frog     1 METAEEEDICRVCRSEGTSEKPLYHPCVCTGSIKFIHQECLVLWLKHSRKEYCELCKHRFAFTPI 65

  Fly    66 YAPDMPRVLPIKDVLVGLMSAVLEGARCWLHYTLVGLAWFGVVPLSAYRTYRYLFRASSFDMILT 130
            |:||||..|||:|:..||::::....|.|.|||||..||.|||||:|.|.|:.|| ..|...:||
 Frog    66 YSPDMPSRLPIQDICAGLITSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLF-TGSVSSLLT 129

  Fly   131 LPFDIFSVENLASDAFRGCFVVTCTLLSFIGLVWLREQILHGGGPDWLE------------RDDA 183
            ||.|:.|.|||.:|..:|||||||||.:||.||||||||:|||.|.|||            :::.
 Frog   130 LPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPQWLEQNQPPPLNVLGQQNEV 194

  Fly   184 PLQAAAAN---------PAPDPAAEAAPQPQDDNNNADDNEAPAPADNDG-QDAQAQDAAPAAAA 238
            |...||.|         ||.:|.....|..|::  .|||.|    .|||. :||..:|||.|.  
 Frog   195 PANIAADNMALDQPANPPAGNPVVGENPDIQEE--QADDEE----EDNDDEEDAVIEDAADAN-- 251

  Fly   239 PVVDADADEQNWNPMEWDRAAEELTWERLLGLDGSLVFLEHVFWIISLNTMFIFTFAFCPYCVGN 303
               :...|:.|||.:|||||||||||||:|||||||||||||||::||||:||..||||||.:|:
 Frog   252 ---NGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGH 313

  Fly   304 FILSSM---DLLQPEKPLLHFHGLITTLFGYCCIGLTLVVLHFFSRVFRLRRVCWFIGLCYIVVK 365
            |.:..:   |.::..    ||.|||||:.||..:.:||::.|..:.|.:.:|....:|:||||||
 Frog   314 FSVVGLGFEDYVRAS----HFEGLITTIVGYVLLAVTLILCHALAAVVKFQRSRRLLGICYIVVK 374

  Fly   366 VSLLSVLEIGVLPLICGWWLDICSLPLLDASLKDRKESFKAAPGTSLFVHWMFGMVYVYYFAAFV 430
            ||||.|:||||.|||||||||||||.:.||:||||:.||::||||::|:||:.|||||:|||:|:
 Frog   375 VSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFESAPGTTMFLHWLVGMVYVFYFASFI 439

  Fly   431 SLLREVLRPGVLWIFRNVNDPDFSPIQEMIHVPIVRHIRRLVASAMIFGFAVLLMLWLPIRILQV 495
            .||||||||||||..||:|||||:|:|||||:||.||:||.:.|.::||..|||||||||||::.
 Frog   440 LLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKH 504

  Fly   496 VCPDFLPY--ALSGD---SAVNLQLLLLQIVLPGFFEQTQTRIWLKGLLRIWCTAVAWLLGIRSY 555
            :.|.||||  .|..|   |.::|:|||||:|||...||..||.|||||:|.|.....:||.:.||
 Frog   505 MLPTFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSY 569

  Fly   556 LLPAPEPEPEIPAAGEEGVENAAGENENQEGEAADAAAQPPAPPPPPPPPVEPAPAPRNLAAAHQ 620
            ||           ..:|..||    |.||:....:..|:..|.|          .....|.||||
 Frog   570 LL-----------GDQEENEN----NANQQAANNNQHARNNAVP----------VVGEGLHAAHQ 609

  Fly   621 AIMQRDAPVGFQPYDKPSLFALRLCALLALMCLSIVCAAMLTLTVPVYIGRRLMLIWSSQPDEKA 685
            ||:|:..|||||||.:|..|.||:..|:..||::::.|:::.||:||:.||.||..|:       
 Frog   610 AILQQGGPVGFQPYRRPVKFPLRILLLIIFMCITLLIASLICLTLPVFAGRWLMSFWT------- 667

  Fly   686 AGAAAAEGAGEVVENLDPIDPEGARKNERLLRSHELYTAELGGYLCWIVCRVVAAVVTLLPQGRA 750
             |.|                           :.||||||..|.|:||:..|.|..:|..:||||.
 Frog   668 -GTA---------------------------KIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRR 704

  Fly   751 AIVDKIKHWVRVALQYALPVLTLLGIFVLVPLLIGLLIELAVVIPLRVPLRKTPIHFLWEDWALG 815
            .|:.|:|.|..:.::..:..|.|.|:   ||||:|||.||.:|.||||||.:||:.:.|:|||||
 Frog   705 VILLKVKEWSLMIIKTLVVALLLAGV---VPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALG 766

  Fly   816 VLYCKIAIALTMMGPDWHLKRALDRAYMDGLRDFDLKFVMRDLAVPVVTTIGLALAIPYVMAHMM 880
            ||:.||..|:|:|||.|.||..:::.|.:|:|:.||.|::|.||.||::.:.|:|.|||::|..:
 Frog   767 VLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHFIIRRLAAPVISVLLLSLCIPYIIAAAI 831

  Fly   881 FPIFLADAYAQHVVARLVYPVSFIVVGSICILLFQIDQLKKLYLSIKVDKYLVGQRLVNYEHR-- 943
            .|:....|..|::|.|.:||...:||..:.||.|||.|.|:||..||.|||||||||||||.:  
 Frog   832 VPVIGVTAEMQNLVQRRIYPFLLMVVVLMGILSFQIRQFKRLYEHIKNDKYLVGQRLVNYERKSG 896

  Fly   944 KKQQQQQEEEKEQQ 957
            |.....|..:..|:
 Frog   897 KSATSAQSPQTTQE 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1317NP_001163328.1 RINGv 9..56 CDD:128983 30/46 (65%)
DotA_TraY <737..913 CDD:275142 76/175 (43%)
marchf6XP_002938364.3 RING_CH-C4HC3_MARCH6 9..58 CDD:319616 32/48 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 814 1.000 Domainoid score I71
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4301
Inparanoid 1 1.050 902 1.000 Inparanoid score I372
OMA 1 1.010 - - QHG55388
OrthoDB 1 1.010 - - D170933at2759
OrthoFinder 1 1.000 - - FOG0003180
OrthoInspector 1 1.000 - - oto103708
Panther 1 1.100 - - LDO PTHR13145
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3077
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

Return to query results.
Submit another query.