DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Rap1 and ras-1

Sequence 1:NP_001189023.1 Gene:Rap1 FlyBaseID:FBgn0004636 Length:184 Species:Drosophila melanogaster
Sequence 2:NP_496623.1 Gene:ras-1 WormBaseID:WBGene00004310 Length:212 Species:Caenorhabditis elegans

Alignment Length:188 Identity:89/189 (47%)
Similarity:127/189 (67%) Gaps:17/189 (9%)


  Fly     5 KIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69
            :|||:|.|||||||||:||:|..||:.|||||||||.||..||...|.||||||||.|:|:.||:
 Worm    19 RIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMRE 83

  Fly    70 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNL 134
            .|::.|.||::|:::|.:::|.:::.|.|.|.|:||.||.|::|||||.|||.||.|.:...:.|
 Worm    84 QYLRTGSGFLIVFAVTDRNSFEEVKKLHELICRIKDRDDFPIILVGNKADLENERHVARHEAEEL 148

  Fly   135 ATQFNCAFMETSAKAKVNVNDIFYDLVRQINK-----------------KSPEKKQKK 175
            |.:.:..::|.|||.:.||::.|:|:||.:.|                 :||.|.:||
 Worm   149 AHRLSIPYLECSAKIRKNVDEAFFDIVRLVRKYQHDERMPIHPHDDRKLESPIKLKKK 206

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Rap1NP_001189023.1 Rap1 3..165 CDD:133375 83/160 (52%)
ras-1NP_496623.1 small_GTPase 30..181 CDD:197466 76/151 (50%)
M_R_Ras_like 30..179 CDD:133345 75/149 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0000044
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R1068
TreeFam 00.000 Not matched by this tool.
22.030

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