Protein Alignment Srrm234 and Srrm3

DIOPT Version :10

• Sequence 1: NP_001097475.2
• Gene: Srrm234 / 38206
• FlyBaseID: FBgn0035253
• Length: 1655
• Species: Drosophila melanogaster
• Sequence 2: XP_038945678.1
• Gene: Srrm3 / 685890
• RGDID: 1587868
• Length: 669
• Species: Rattus norvegicus
• Alignment Length: 1059
• Identity: 207/1059 - (19%)
• Similarity: 307/1059 - (28%)
• Gaps: 459/1059 - (43%)

  Fly     3 NGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHDRKRKIEV 67
            ||.    |:..|::|    :|.           |||::.:..:..|.:..::|||||:|||::|:
  Rat    20 NGF----PQPGGSSG----SWP-----------RAEEELRAAEPGLVKRAHREILDHERKRRVEL 65

  Fly    68 KCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGKTDLAKDEFGRVANTTTSTATAAVRTTATAS 132
            ||:||::::|:||.:.|||:.:|.:|||.||.:
  Rat    66 KCMELQEMMEEQGYSEEEIRQKVGTFRQMLMEK-------------------------------- 98

  Fly   133 AATASTMTTTTEATTVKVAKPKKRRKRRKRAGHAITTTTTEKSAAISTPGSKTSSPRTQTG-EPA 196
                       |....|..:|         ..|.:..|                 ||...| ||.
  Rat    99 -----------EGVLTKEDRP---------GAHIVAET-----------------PRRMEGLEPG 126

  Fly   197 SSAPSATSNGARKTKAPYFQHDNREYLAKYESFRLTAHTWNYAAVARKFKPLRPALASGANKTRR 261
            ...|            |:.:.|.                           |:
  Rat   127 LEYP------------PFDEDDG---------------------------PV------------- 139

  Fly   262 PAVSKRTHPDCAC--ACQQKDPEPALEPAHR--TAEHSIQKELPSSQMKINIDGSVLLELLKYSS 322
                     ||.|  ||.:         .||  ..:|                         :||
  Rat   140 ---------DCDCPVACYR---------GHRGYRTKH-------------------------WSS 161

  Fly   323 SSLLGTLLGAGSAVATSARDTHQIAEAQQQKNARLREAFNISEYFVEGSSFDGDRKAKEDLAKSV 387
            ||
  Rat   162 SS--------------------------------------------------------------- 163

  Fly   388 ALQKELDAQRESLAAAAAAAAAGKDKETGKRYALVRTPSRERDRDAGDAAANGDERDHVSKTDKK 452
                                              ...|.:::.:..|              :.::
  Rat   164 ----------------------------------ASPPPKKKKKKKG--------------SHRR 180

  Fly   453 KRKKRARES-----SASPERKKKKKSKKHKKESKSKKKRSRKRKHSESGRDSDRDSDEEDDSSEE 512
            .||||..||     ||||.||||:..|||::                         |..|..|..
  Rat   181 SRKKRRLESECSCGSASPLRKKKRSVKKHRR-------------------------DRSDSGSRR 220

  Fly   513 ERRESKNVRKKAKKDKKKRDKKLKKKSRARASS----------------SDSERTNSPSRKENKS 561
            :||......|..:|:|.|..|:...:|..|.|.                |||...|..|.|....
  Rat   221 KRRYRSRSLKSKRKEKIKERKRPHTESPGRRSHHHSSVSSHSPSVSSHYSDSGSPNRLSPKHRDD 285

  Fly   562 DRSRGAKASKSDEK----------APQQENVMRSRSRERKDTRSSRPLEA-SIDSRQRKPR--ER 613
            .|..|::.|.....          :|||    ...||:|......||..| |...:...||  ::
  Rat   286 GRKTGSQRSSGSRSLSPSGGSGWGSPQQ----NGGSRQRSGAHGGRPGSAHSPPDKPSSPRACDK 346

  Fly   614 SAA--TPPRKEPERHRERSKDRQRSKEKHRSRDRLRSRERQRSRERQRSRERQRSKERQRSKERQ 676
            :||  |||        .|.||.|..:....|:.|........:|.|:|.|.|:||:....:..|
  Rat   347 AAAAPTPP--------ARGKDSQSPRSAPSSQGRGGRAAGGTARRRRRRRRRRRSRSSANAPRR- 402

  Fly   677 RSIERQRSKERQRSKERQRSRSKDALRCKEKPQCNEKERSRERRRSKSKDRQRSKEKHRPKDEQQ 741
                            |.|.|:|.|     .|:.:.:..|.....|.|......     |..|..
  Rat   403 ----------------RGRRRAKPA-----PPRGSSRSLSGAHSSSDSGGGAPG-----PGPEPG 441

  Fly   742 SVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSKEGQLSKDRQGLKERQ 806
            |             |.......:|:|||........:.....:..||...||..|....|.....
  Rat   442 S-------------ERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGNSSSRSPGPHPGS 493

  Fly   807 RSNERKRSKERQPSKEKQRSRERQRSREPLQSKDRQRSKERQ-RSRERPAKEARPTRSPRERSSK 870
            .|:.|..||.|..|.:|   |.|..|..|...|...|.|:.: |:|...|:.||..|  |.||..
  Rat   494 WSSSRSPSKSRSRSPDK---RTRSPSLSPSPKKPLGRDKDSEGRARHAEAEAARTRR--RSRSYS 553

  Fly   871 SRDDRRHRSPTNASRKQKDDTKLSRNARFKS--PAHSPEAPPKKSVPTPAFNPFKAAEDTVNDIL 933
            ....||..||:     ..:..:::|....:.  ||..|..|.....|:....| ||:    :.:|
  Rat   554 PIRKRRRDSPS-----FMEPRRITRKLLLRGLWPAWGPCGPGSTGSPSDTHCP-KAS----HPLL 608

  Fly   934 GTKSVMV--ALEQTKRQRAASSSSSDSDSSGSSSTSSRTPSPKPTPRKQKKRSKTPELKEVKKEI 996
            ..:.::.  .|||...|                    ..|..:|.|..|..:.:.|:.::.:..:
  Rat   609 PAQPLLFLQLLEQRLLQ--------------------PEPQQEPKPWAQPWKLQQPQSRDSQPFL 653

  Fly   997 SPRKESRVSVKREQSNSPQ 1015
            ...:|       .||..||
  Rat   654 QRLQE-------PQSQLPQ 665

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Srrm234	NP_001097475.2	cwf21_SRRM2-like	52..100	CDD:410600	25/47 (53%)
		PTZ00121	<560..1154	CDD:173412	108/476 (23%)
		U2AF_lg	747..>876	CDD:273727	34/129 (26%)
		SRRM_C	<1584..1612	CDD:464573
Srrm3	XP_038945678.1	cwf21_SRRM3	34..101	CDD:410602	30/109 (28%)
		SRRM_C	527..572	CDD:464573	15/51 (29%)