DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and rbm12b.3

DIOPT Version :9

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_002934460.2 Gene:rbm12b.3 / 100491658 XenbaseID:XB-GENE-22063331 Length:659 Species:Xenopus tropicalis


Alignment Length:1027 Identity:206/1027 - (20%)
Similarity:330/1027 - (32%) Gaps:412/1027 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGEMGDAFIAFSTDEDARCAMLKDREKLM 65
            |:|:||||.||..|.:.|||:|||||.||:|||||.||::|:|||.|:||||||.||.:....:.
 Frog     1 MAVVIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHITGGKIGEAFIIFATDEDARRAMSRSGGFIK 65

  Fly    66 EIQVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPVVVPVTAAKVAGPAAPLPPIIGGLNTF 130
            :.::.|.|||:||||..:|..||                     ..|..||...:..::..:.  
 Frog    66 KSRIELFLSSKAEMQHTLEMNRK---------------------GNKDLGPTPDISKLLNVMK-- 107

  Fly   131 LGQGQVKGVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDDSDRERERDRQRERERGRKRR 195
                  ||:          ||:                                           
 Frog   108 ------KGI----------YQK------------------------------------------- 113

  Fly   196 SDRLDKSQERELKMVAGGGALPSPWAQPPQNQLPAVGLGLNMGLNLNLPQIPSLQSYTTSTTTTN 260
                                                                            |
 Frog   114 ----------------------------------------------------------------N 114

  Fly   261 VTNNYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAFASVNPYAQMYPQLFQQQQMLLQ 325
            :.|..|:|....           |||:.                            :.::.|...
 Frog   115 MANKSNVEAGFD-----------SSGAK----------------------------YTEENMPRP 140

  Fly   326 QQQTQAKVSPTMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIP--HNGIKIMM 388
            :.|.:..:.|......|            |:.:.|:....|..|::::|.|..:.  |..::   
 Frog   141 KYQGKKDIWPLKDNGYG------------YVFLYGLPYTASELDVKEFFHGFNVVDLHFSVR--- 190

  Fly   389 VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQI--------VPVGDDEFEMAEE-RASRQ- 443
            .||.|.|.|||:|..|..||.|:.|:|.....|.|.:        :..|....|..|. |.:|| 
 Frog   191 QNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAGGPTDERNESVRKNRQW 255

  Fly   444 -------GQDGSRSHGNHNGGDRGERGGGAPVPVPRPVTNVLYIEDLPQTTTEQDIMKMFSASYT 501
                   ....|||...|....|.          |......|::.::..:..:.|| |:|.....
 Frog   256 SPRFPSKNHSRSRSPKIHRTRSRS----------PHNQQFYLHLLNMSYSVQKTDI-KLFFGDPD 309

  Fly   502 VVD----ILLSPSPKNRRESVAFVLFAREAEADSALQDTSKHYIGFRQLRVRSSSEEDMQNAKEK 562
            :.|    :||..:....||  .|||...|......| ...|..:..|::.|...:.:||.     
 Frog   310 IPDTQIKLLLDRNGVQTRE--GFVLIKNEKFYQKCL-GLHKGLLNGREVWVYPIARKDML----- 366

  Fly   563 QRRANEQLLKEEADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAEDQQQQQQMNMGPN 627
                             ||::..:|:|.::                                   
 Frog   367 -----------------ELIESSERQQLER----------------------------------- 379

  Fly   628 FNSNMSPNMMAPFVNGGNMPFHMPPLQQNGVNNFPFNMNNN---YNYNGNSNGNGPNYPNDNGGA 689
             |::..|:....|.:..|:..:|      .:.|||||::.:   ..:.|        :|.|    
 Frog   380 -NTSEDPSPKKKFRDRSNLKRYM------YLRNFPFNVSKSEVQKFFAG--------FPVD---- 425

  Fly   690 GVIQRPRQEDVFVRVHNCEYATRANDLGE---LFSLEHLRIEHIEQLFNERNQSSGEFIV-EFSD 750
                   ::|:|:.     |.:|...|||   .|..||..|  :.:..|::.....|.:: ..|:
 Frog   426 -------EQDIFLL-----YDSRGVGLGEALVTFPSEHQAI--LAEGLNQQKFLGTEVLLRRISE 476

  Fly   751 PASCKL-AIREFHNRR--FRGRGLRVVAITPQ----EIADRMKKPFMDYLPGGNGPRKAETNNAN 808
            ....:| |..|.||.|  .|....|...:.|.    |::|...:.:       :.||....::..
 Frog   477 EQMKELGAFPEDHNEREPKRSTSYRDEYLEPAEQGFEVSDYGHRSY-------DQPRPYRDDDFG 534

  Fly   809 DGAGGNKASAQPSRRRGPSRFDKPQEQPSQQQDRPLSLEREDNSSTS--SNAPVKQHFNPFARPD 871
            .|:|        |.||.|.|...|.:   ..||.|.......|.:..  .:.|:           
 Frog   535 HGSG--------SIRRSPERLRSPYD---MNQDEPYGRFHMGNQNVEDYKSGPI----------- 577

  Fly   872 PPLSSSSLSPSNQGQVKPTSPVPVPTSIIPDKFNRP---GCVVAMRNVPFKAELKDIMRFFSDYK 933
                                             |||   |..:.::|||:.|.:::|:.||..|.
 Frog   578 ---------------------------------NRPRSGGASIRLKNVPYTATIEEILDFFYGYN 609

  Fly   934 LSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFESRRKKQIFNRTVYLDII 985
            :.||.:...:|.:|...    |..|:..||.:|.....::.|..|.|::.||
 Frog   610 VVPDSVEMDYNCKGTAI----VHMENYDEAAAAVNELNERPIGPRKVHMSII 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954 40/72 (56%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700 23/71 (32%)
RRM <364..551 CDD:223796 51/209 (24%)
RRM_SF 478..549 CDD:240668 17/74 (23%)
RRM_SF 702..773 CDD:240668 19/77 (25%)
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700 20/71 (28%)
rbm12b.3XP_002934460.2 RRM1_RBM12B 2..80 CDD:410139 44/77 (57%)
RRM_SF 158..240 CDD:418427 23/84 (27%)
RRM_SF 285..365 CDD:418427 18/83 (22%)
RRM_SF 399..474 CDD:418427 22/106 (21%)
RRM_SF 585..657 CDD:418427 20/75 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D132643at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11245
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.040

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