Protein Alignment Sf3b3 and DDB1A

DIOPT Version :10

• Sequence 1: NP_728546.1
• Gene: Sf3b3 / 38093
• FlyBaseID: FBgn0035162
• Length: 1227
• Species: Drosophila melanogaster
• Sequence 2: NP_192451.1
• Gene: DDB1A / 825890
• AraportID: AT4G05420
• Length: 1088
• Species: Arabidopsis thaliana
• Alignment Length: 1276
• Identity: 285/1276 - (22%)
• Similarity: 512/1276 - (40%)
• Gaps: 255/1276 - (19%)

  Fly     4 YNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLE--LLRPDSNTGKVHTLLSTEIFGCVRALM 66
            |.:|..|.|.|||:..|||:..::..:::::...:|  ||.|..    :..:|...|:|.:..|.
plant     6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQG----LQPMLDVPIYGRIATLE 66

  Fly    67 AFRLTGGTKDYIVVGSDSGRIVILEYNP-SKNALEKVHQETFGKSGCRRIVPGQYFAIDPKGRAV 130
            .||..|..:|::.:.::..:..:|:::| |...:.:...:...:.| |....||...|||..|
plant    67 LFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG-RPTDNGQIGIIDPDCR-- 128

  Fly   131 MIGAVEKQKLAYIMNRDTQARLTISSPLEAHKSNTLTYHMVGVDVGFDNPMFACLEIDYEEADMD 195
            :||......|..::..|.:.:|..:..:...:...|....:   .|...|..|.|..|.::|
plant   129 LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---FGCAKPTIAVLYQDNKDA--- 187

  Fly   196 PSGDAAQRTQQTLTFYELDL-GLNHVVRKYSE-PLEEHANFLVSVPGGNDGP--SGVLICSENYL 256
                   |..:|   ||:.| ..:.|...:|: .|:..|:.|:.||     |  .||||..|..:
plant   188 -------RHVKT---YEVSLKDKDFVEGPWSQNSLDNGADLLIPVP-----PPLCGVLIIGEETI 237

  Fly   257 TYKNLGDQHDIRC------PIPRR--------RNDLDDPERGMIFICSATHRTKSMYFFLLQTEQ 307
            .|          |      .||.|        |.|:|...                  :||....
plant   238 VY----------CSASAFKAIPIRPSITKAYGRVDVDGSR------------------YLLGDHA 274

  Fly   308 GDIFKITLETDDDVVSEIKLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQI-AHLGDDDDEP 371
            |.|..:.:..:.:.|:.:|::.......|:.:..|....:||.|.:|:..|.:: .|
plant   275 GMIHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVFVGSSYGDSQLVKLNLH-------- 331

  Fly   372 EFSSAMPLEEGETFFFAPRALKNLV-LVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTL 435
                             |.|..:.| :::...:..||:...|.||..:...|:....|.....:|
plant   332 -----------------PDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSL 379

  Fly   436 RVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAYIIVSFVNAT--LVLSIGETVEEVTDSG 498
            ||:|:|:.::|.|..||.| ...:|::|...|:.||.:::|||::.|  |.:::.:.:||....|
plant   380 RVVRNGIGINEQASVELQG-IKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEG 443

  Fly   499 FLGTTPTLCCAALGDDALVQVYPDGIRHIRSDKRV--NEWKAPGKKSITKCAVNQRQVVITLSGR 561
            ||....||.|.....:.||||..:.:|.:.|..|.  :||.||...::.....|..||::...|.
plant   444 FLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLLATGGG 508

  Fly   562 ELVYFEMDPTGELNEYTERSEMPAEIMCMALGTVPEGEQRSWFLAVGL-ADNTVRILSLDPNNCL 625
            .|||.|:. .|:|.| .:.:.:..|:.|:.:..:.:....|...|||: .|.:|||.||.....:
plant   509 HLVYLEIG-DGKLTE-VQHALLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFSLPELTLI 571

  Fly   626 TPCSM--QALPSPAESLCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVL 688
            |...:  :.:|. :..||..|                         |..||...|.:|.||...:
plant   572 TKEQLGGEIIPR-SVLLCAFE-------------------------GISYLLCALGDGHLLNFQM 610

  Fly   689 DPVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEYASG 753
            |..:|.|.|.:...||::|:.|.....:.:..|.|.|.|..:.|....:...:.::.:.:.:...
plant   611 DTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCP 675

  Fly   754 FSSEQ-------CSEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRTFVIHPDTGRMLIAET 811
            |:|..       ..||.:.|.|    |..::||..             ||..:.....|:
plant   676 FNSAAFPDSLAIAREGELTIGT----IDDIQKLHI-------------RTIPLGEHARRI----- 718

  Fly   812 DHNAYTEDTKSARKEQMAEEMRSAAGDEERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIR 876
               .:.|.|::.....:..:..|    ||.|:                             ..:|
plant   719 ---CHQEQTRTFGICSLGNQSNS----EESEM-----------------------------HFVR 747

  Fly   877 CLDAMHGQTMFSVPLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYKID 941
            .||....:.|.:.||...|  ...::|..|...|...|..||.|..|......::|..: ::.::
plant   748 LLDDQTFEFMSTYPLDSFE--YGCSILSCSFTEDKNVYYCVGTAYVLPEENEPTKGRIL-VFIVE 809

  Fly   942 PTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIY-----DFGKKKMLRKC-ENKHIPYQI 1000
            .  ..|:.:...:......:|..|.|:|||...:.:::|     |.|.:::..:| .:.||  ..
plant   810 D--GRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHI--LA 870

  Fly  1001 VNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLLDYDT-IAIADKFGNLS 1064
            :.:|..|..:.|.|:.:|:..:.|:..|..:...|.|.:..|::|..:||.|. :...:.|..|:
plant   871 LYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLT 935

  Fly  1065 IQRLPHSVTDDVDEDPTGTKSLWDRGLLSGASQKSENICSFHVGEIIMSLQKATLIP-------G 1122
            :::.....||:            :||.|       |.:..:|:||.:...:..:|:.       |
plant   936 VKKNSEGATDE------------ERGRL-------EVVGEYHLGEFVNRFRHGSLVMRLPDSEIG 981

  Fly  1123 GSEALIYATLSGTVG--AFVPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRS-----SYYPV 1180
            ....:|:.|::|.:|  |.:|   :|.|.|.:.|:..:|.....:.|..|..:||     .....
plant   982 QIPTVIFGTVNGVIGVIASLP---QEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043

  Fly  1181 KNVLDGDLCEQYLSIEAAKQKSIAGDMFRTPNQICKKLEDI 1221
            :|.|||||.|.:|.:...|.:.|:..|.....::||::|::
plant  1044 RNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEEL 1084

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sf3b3	NP_728546.1	MMS1_N	76..592	CDD:463091	126/540 (23%)
		CPSF_A	872..1194	CDD:427182	78/342 (23%)
DDB1A	NP_192451.1	MMS1_N	76..537	CDD:463091	126/540 (23%)
		CPSF_A	744..1057	CDD:427182	78/341 (23%)