DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rev1 and POLH

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_568638.2 Gene:POLH / 834503 AraportID:AT5G44740 Length:672 Species:Arabidopsis thaliana


Alignment Length:723 Identity:146/723 - (20%)
Similarity:261/723 - (36%) Gaps:222/723 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHS---KGGNAATDVPVHPQADRKAELELFAQRFE 334
            |.:.|:|||||:|.|..|.:|||||||.||...   :||.                         
plant    12 RVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGG------------------------- 51

  Fly   335 HHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY------- 392
                                    :.:.|||||:.|::..|...:|...||:::.:..       
plant    52 ------------------------LIAVSYEARKCGVKRSMRGDEAKAACPQIQLVQVPVARGKA 92

  Fly   393 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDV------------------- 438
            |...|:.....:...:|: :...|..|.||::::|||.|..:..|.                   
plant    93 DLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAAESMLADAPPESLELIDEEVLKSHILG 156

  Fly   439 --------------------------------MAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMA 471
                                            :..|:.||::|..:|...||||:|.||:||::|
plant   157 MNREDGDDFKESVRNWICREDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLA 221

  Fly   472 TKEAKPNGQFLLD--SSNDILAYMAPMSLDLLPG-VGSSISHKLKQAGLNNCGDVQNTTLEKMEK 533
            :...||..|.::.  :..::|:.:....:..|.| :|:|:...|   |::..||:...:..|:::
plant   222 SGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDL---GVDTVGDLLQFSETKLQE 283

  Fly   534 VLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNF-GIRFTNSVECEQ-FLCQLSEEVTKR-- 594
            ..|...|..|:...|||....:....:.|:..:...| |.|...|:...| :|.|||||:::|  
plant   284 HYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLG 348

  Fly   595 --LVEIRRKARSINLKIMVRAAEAPVETSKY------MGHGVCDIINKSSLIKYATDDVNVITTV 651
              |.:.:|.|.::.|......::......|:      |.:||         .|...|..|:....
plant   349 SDLEQNKRIASTLTLHASAFRSKDSDSHKKFPSKSCPMRYGV---------TKIQEDAFNLFQAA 404

  Fly   652 VLDLMKDADIPPD-------ELRGLGIHLTRLEDANEVRKENNIKEMFGKMSEMRKDKPIPQGAV 709
            :.:.|....|.|.       .:.||.:..:::.|                         ||.|. 
plant   405 LREYMGSFGIKPQGNKLETWRITGLSVSASKIVD-------------------------IPSGT- 443

  Fly   710 GDKSIGDDKVNKPLVFENKPKPREPRNVLSMLTAAAVSRKSVTEDRSQRGTSKPITRPLSLVPKL 774
              .||.....::|.|    |.......|...:...|.:.:..:|.||        |...:.:|::
plant   444 --SSIMRYFQSQPTV----PSRSADGCVQGNVAMTASASEGCSEQRS--------TETQAAMPEV 494

  Fly   775 DEDVLAQLP----EDIRLEVIANREEHLCIAEYDGYRSPQYPTLRS------------------- 816
            |..|...||    :|..:::::.::...|.:......|.|..:.:.                   
plant   495 DTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVSTQSESNKGTQTKKIGRKMNNSKEKNRG 559

  Fly   817 -PPLLNPYVTTNVS-PLKATDLKPSTSRAAVARL------------QKRKERKEQEHYIRSDQIV 867
             |.:::.:...|.: |.|....:.||..:|..|.            |:.:|.:|.:...::|:|.
plant   560 MPSIVDIFKNYNATPPSKQETQEDSTVSSASKRAKLSSSSHNSQVNQEVEESRETDWGYKTDEID 624

  Fly   868 ADYIDDLP 875
            ....|:||
plant   625 QSVFDELP 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 106/485 (22%)
Rev1_C 890..985 CDD:213388
POLHNP_568638.2 PolY_Pol_eta 15..435 CDD:176456 105/481 (22%)
Rev1_UBM2 <623..641 CDD:412037 4/10 (40%)
Blue background indicates that the domain is not in the aligned region.

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