DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and Polh

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_109640.1 Gene:Polh / 80905 MGIID:1891457 Length:694 Species:Mus musculus


Alignment Length:731 Identity:144/731 - (19%)
Similarity:243/731 - (33%) Gaps:224/731 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 RYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHS---KGGNAATDVPVHPQADRKAELELFAQRFE 334
            |.|..:|||||||.|..|..|.||..|.||...   |||.                         
Mouse     7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGG------------------------- 46

  Fly   335 HHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY------- 392
                                    |.:.|||||..|:...|:...|.||||:|.....       
Mouse    47 ------------------------IIAVSYEARAFGVTRNMWADDAKKLCPDLLLAQVRESRGKA 87

  Fly   393 DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHE---------LNVDVM--------- 439
            :...|:|.:..:.:.::.:.: ||..|.||.:::||....|         ::.|::         
Mouse    88 NLTKYREASVEVMEIMSYFAV-IERASIDEAYIDLTSAVQERLQKLQGQPISADLLPSTYIEGLP 151

  Fly   440 ------------------------------------------AFVSHLRQEVYSKTGCPCSAGVA 462
                                                      ..|..:|..:.||||..||||::
Mouse   152 RGPTVEETVQKEAIRKQGLLQWLDSLQSDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGIS 216

  Fly   463 GNKLLARMATKEAKPNGQFLLD--SSNDILAYMAPMSLDLLPG-VGSSISHKLKQAGLNNCGDVQ 524
            .||:||::|....|||.|.|:.  |...:.:.|....:..|.| :|:|:   ::..|:...||:.
Mouse   217 HNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV---IEVLGIEYMGDLT 278

  Fly   525 NTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNF--GIRFTNSVECEQFLCQL 587
            ..|..:::...|:|.|..|:..||||:..|:...|:.||:....||  ........:.:.:|.||
Mouse   279 QFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQL 343

  Fly   588 SEEVTKRLVEIRRKARSINLKIMV--------------RAAEAPVETSKYMGHGVCDIINKSSLI 638
            :.|:.:||.:.|.....:..:::|              |....|...:..|.......|...:..
Mouse   344 ALELEERLTKDRNDNDRVATQLVVSIRFQGDRRLSSLRRCCALPRYDAHKMSQDAFAAIRNCNTS 408

  Fly   639 KYATDDVNVITTVVLDLMK-DADIPPDELRGLGIHLTRLEDANEVRKENNIKEMFGKMSEMRKDK 702
            ...|:....:|.:.|...| .|..||                    ...:|.......|..:...
Mouse   409 GIQTEWSPPLTMLFLCATKFSAAAPP--------------------ACTDITAFLSSDSSCQPKV 453

  Fly   703 PIPQGAVGDKSIGDDKVNKPLVFENKPKPREPRNVLSMLTAAAVSRKSVTEDRSQRGTSKPI--- 764
            ||.......:..|               |..|.:..:..:.|:..:|:..:.|.:..:..|:   
Mouse   454 PIASSETRTQGSG---------------PAVPTSKEAATSLASFFQKAAKKQRMKETSFVPLNTA 503

  Fly   765 TRPLSLVPKLDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYRSPQYPTLRS-----PPLLNPYV 824
            |..||..|.|    :.|..:....:....::..|.          |:..|.:     ||..:|..
Mouse   504 TEKLSSKPSL----VFQSSQTTGSQSFFKQKSLLL----------QHTQLSNSAAPDPPQASPAA 554

  Fly   825 TTNVSPLKATD-------LKPSTSRAAVARLQKRKE-----------RKEQEHYIRSDQIVADYI 871
            ..:..|.:..|       :||.:|:|....:....:           .:|.......||::.:..
Mouse   555 QPSCLPAECVDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQRATEDQVLCEKC 619

  Fly   872 D------DLPDFVNPH 881
            |      |:|:..:.|
Mouse   620 DSLVPVWDMPEHTDYH 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 108/492 (22%)
Rev1_C 890..985 CDD:213388
PolhNP_109640.1 PolY_Pol_eta 10..427 CDD:176456 102/469 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..598 5/32 (16%)
zf_UBZ 612..642 CDD:465769 6/24 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 651..694
PIP-box. /evidence=ECO:0000250|UniProtKB:Q9Y253 682..689
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.