DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and rev1

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:XP_073768289.1 Gene:rev1 / 570043 ZFINID:ZDB-GENE-081105-180 Length:1284 Species:Danio rerio


Alignment Length:1279 Identity:373/1279 - (29%)
Similarity:569/1279 - (44%) Gaps:338/1279 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTRD-------EDNGFSEWGGYFEAKKSKLEEQFAAASDPFRKSD-----LFQGISIFVNGRTDP 53
            |:||       |::|:...|||..||.|||||||...:...:|.|     :|.|::|:|||.|||
Zfish    23 MSRDGWRKKASENDGWGGQGGYMAAKVSKLEEQFQKDAPREQKKDGKSSCIFSGVAIYVNGYTDP 87

  Fly    54 SADELKRIMMVHGGTFH-HYERSHTTYIIASVLPDVKVRNMNLSKFISAKWVVDCLEKKKIVDYK 117
            ||.||:|:||:|||.|| :|.||.||:|||:.||:.|::.:...|.:..:|::|.::..:.:.|.
Zfish    88 SAAELRRLMMLHGGQFHLYYSRSKTTHIIATNLPNFKIQELKGEKVVRPEWIIDSIKAGRQLSYI 152

  Fly   118 PYLLYTNQKTSQPMLIFG--------------KP-------KD---------------------- 139
            .|.||..||......:.|              ||       ||                      
Zfish   153 QYQLYAKQKGLNFTRVSGIEGQDPSSNHGPDIKPQPSHTLSKDVLKSTQANHMANYTEKTDHQLD 217

  Fly   140 ----NGANESKSDVEPPKDKAE-VEVDSTKDETQMEL------------------GGILK----- 176
                ||.:...|:|:..|.:.. :..|...|:....:                  .|.||     
Zfish   218 IRLRNGLHSIISEVDAEKSRVNGIHDDDDDDDIACSILPRGSQDTLLTNGHVHPVNGALKPQDFA 282

  Fly   177 --------------------------------------NLQQAV-ATSPEKE------------- 189
                                                  :|:..: |.||.|:             
Zfish   283 DHHPHVVDKASNQSHLPQDKYREGEEPCCSYTESKANSHLRSLISAASPAKQPGPHNMQTDLHQK 347

  Fly   190 -------------ASASESKITNLS----TTSNNSTTA-------RTAADPNFLSEFYKNSRLHH 230
                         ||..:.....|:    .|||:||.|       :::|:...:|||:.:|||||
Zfish   348 PTSNSGTLGAPQKASLHDQTTVRLNGSYHVTSNSSTLANSSNQSGKSSAEAGIISEFFSHSRLHH 412

  Fly   231 IATLGAGFKQYVCRLRQKHGTQG---FPKRETLKSL-ANSHHNCL-------ERYVMHIDMDCFF 284
            |:|....|.:||..|:.:....|   |..||.||.| ||.:...|       :..|:|:||||||
Zfish   413 ISTWRNEFSEYVNSLQSRRRAAGGAVFSGREKLKKLKANCNSGSLMAAPQVRQSCVLHVDMDCFF 477

  Fly   285 VSVGLRTRPELRGLPIAVTHSKG-GNAATDVPVHPQADRKAELELFAQRFEHHFH---DGD---- 341
            ||||:|.||:|.|.|:|||.::| |..|.    .|.|:.:.|.:.:..:.:|:..   |||    
Zfish   478 VSVGIRHRPDLIGKPVAVTSNRGPGRVAQ----RPGANPQLEFQYYQNKQKHYRKEKTDGDLEMT 538

  Fly   342 ----KAEKVRSGFDK---KMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFEGYKE 399
                ..|...:|..:   .:|::||||||||||:.|:|||||.|:|.:|||:|:::||||..|||
Zfish   539 PSPQDGEVPSNGVHEDLAALSMAEIASCSYEARQAGVRNGMFFGRAKQLCPDLQSVPYDFHAYKE 603

  Fly   400 VAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGN 464
            ||..:|:.:|.||.||||:||||..|:.|.|..||.|........:|:::..||||..|.|::.|
Zfish   604 VALAMYEILASYTHNIEALSCDEALVDATALLVELGVSPDELARSIREDIKEKTGCCASVGMSSN 668

  Fly   465 KLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLE 529
            .|||||||::|||.||:|| .|.::..::....:..|||||.|:|.||...|::.|||:|..:|.
Zfish   669 ILLARMATRKAKPKGQYLL-RSEEVDDFIRDQPVSSLPGVGRSMSSKLTSLGVSTCGDLQQLSLS 732

  Fly   530 KMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKR 594
            ::::..|.:.||.||:.|||:||||:..|:.||:||||||:.||||...|.|.||..||.||.||
Zfish   733 QLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSVSAEMNYNIRFTQVEEAESFLNNLSMEVQKR 797

  Fly   595 LVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITTVVLDLMKDA 659
            |.....:.|.:.||:|:|...||||.:||.|||:||...:|.|:...||...||.:..:.|....
Zfish   798 LEGAGLRGRRVTLKVMMRKPGAPVEPAKYGGHGICDNFARSVLLAQPTDSGRVIASEAIKLFHAM 862

  Fly   660 DIPPDELRGLGIHLTRLEDANE------VRKENNIKE-MFGKMS--EMRKDKPIPQGAVGDK--- 712
            .:...::||:|:.:.:|:.::.      ..:..:|:: :..|.|  ...|:.|...|.:...   
Zfish   863 KLNVKDMRGVGLQVQQLDGSHADPSGQGPSRGRSIRDLLLAKQSAHSPSKESPSQDGLISASSSR 927

  Fly   713 --SIGDDKVNKPL-----------------VFENKP--------KPREPRNVL------------ 738
              |....:|...|                 :.:..|        .|..|.:|.            
Zfish   928 AFSSNQKRVTPALSPPPSTSSSSSPPPSFTIIDPMPGTSKGDYHHPHTPNHVRACLNISIEVPSP 992

  Fly   739 -----SMLTAAAVSRKSVTEDRSQRGTSKPIT--------RPLSLVP------------------ 772
                 |:|.|..:..:...|:..:....:|.|        ||.|..|                  
Zfish   993 SQVDPSVLKALPIDIRRQVEETWRYREEQPSTSSHYSTPPRPPSTPPPGPSLVLQLPNQPGQPCT 1057

  Fly   773 -----------KLDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYRSP---------------QY 811
                       ::|.||.|.||.::        :|.||.|    ||:.               .:
Zfish  1058 TGIILELPDFSQVDPDVFAALPREL--------QEELCSA----YRNKGNAQAQASTVVEQKNSF 1110

  Fly   812 PTLRSP---PLLNPYVTTNVSPLK--ATDLK---PSTSRAAVARLQKRKERKEQEHYIRSDQIVA 868
            |.|:.|   .|...|...|.||.|  ::.||   |..|.|      |....|.....:|...:  
Zfish  1111 PQLKQPAVGKLKRRYKKRNTSPAKNGSSPLKKMFPGNSPA------KTSPSKTLPLPLREQDL-- 1167

  Fly   869 DYIDDLPDFVNPHILKLISHPVEMP-ELLMG----DNYKDLLNDWVSREEVPKPNDVDLILKQVS 928
                ..|..::..:.:.:..|:..| ..|.|    ...:.||.:||:....|...|:..::|..:
Zfish  1168 ----KCPSSLSTDVPETLPKPIPRPAPTLAGAHEFSEIRTLLREWVTTISEPMEEDILQVVKYCT 1228

  Fly   929 RMIKNDQLDHVCDVMKYWCRIINMKRSSSCCWHVAYKHIEESIQ 972
            .::::..|:.:..|:||..|:  |::||...|.:|:..:.:::|
Zfish  1229 ELVEDKDLEKLYLVIKYMKRL--MQQSSESVWSMAFDFVLDNVQ 1270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351 37/82 (45%)
PolY_Rev1 218..676 CDD:176455 207/483 (43%)
Rev1_C 890..985 CDD:213388 21/88 (24%)
rev1XP_073768289.1 None

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