DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and Rev1

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001381058.2 Gene:Rev1 / 316344 RGDID:1306715 Length:1234 Species:Rattus norvegicus


Alignment Length:1269 Identity:370/1269 - (29%)
Similarity:555/1269 - (43%) Gaps:356/1269 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RDEDNGFSEWGGYFEAKKSKLEEQFAAASDPFRKSD-----LFQGISIFVNGRTDPSADELKRIM 62
            |.|::|:.:||||..||..||||||  .||..::.|     :|.|::|:|||.|||||:||:.:|
  Rat     9 RAEEDGWEKWGGYMAAKVQKLEEQF--RSDAAKQKDGTASAIFSGVAIYVNGYTDPSAEELRNLM 71

  Fly    63 MVHGGTFH-HYERSHTTYIIASVLPDVKVRNMNLSKFISAKWVVDCLEKKKIVDYKPYLLYTNQK 126
            |:|||.:| :|.||.||:|||:.||:.|::.:...|.|..:|:|:.::..:::...||.|||...
  Rat    72 MLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSSVPYQLYTKPS 136

  Fly   127 TSQPMLIFG---KP-------------------------------KDNGA---NESKSD------ 148
            |:|..|.|.   ||                               |.||.   ||..:|      
  Rat   137 TAQKSLNFTPVCKPEEPVPGPSEIAKQLTNRVNHIIKKIETENEVKANGVSSWNEDSADDGFSSE 201

  Fly   149 -------------VEPPKDKA-----------------------------EVEVDSTKDETQMEL 171
                         |..|:|.|                             .:.:|||::|.:.|.
  Rat   202 GLGQTFPGRKQNGVMHPRDTAVIFNGHAHSSNGALKTQDCLVPVDHSVASRLSLDSTQEEKRAEK 266

  Fly   172 GGI------LKNLQQAVAT-----SPEKEASASESKITNL-------STTSNNSTTARTAA---- 214
            ...      .::||.:...     ||.:.:|.|.|..:|.       ||....|:|..|:|    
  Rat   267 SSTDFRDCSRQHLQHSTTNADTLCSPHRTSSLSPSLHSNTKINGAHHSTVQGPSSTKSTSALTLS 331

  Fly   215 -----------DPNFLSEFYKNSRLHHIATLGAGFKQYVCRL-RQKHGTQGFPKRETLKSLANSH 267
                       |.:|:|:||..||||||:|......::|..| ||:.|.  ||.||.||.:....
  Rat   332 KVAPSVPSKPSDCSFISDFYSRSRLHHISTWKCELTEFVSALQRQRSGV--FPGREKLKKVKTGR 394

  Fly   268 HNCL---------------ERYVMHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVH 317
            .:.:               :..|||:||||||||||:|.||:|:|.|:|||.::|...|   |:.
  Rat   395 SSLVVTDTGDMSVLSSPRPQSCVMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRA---PLR 456

  Fly   318 PQADRKAELELFAQRF----------EHHFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIR 372
            |.|:.:.|.:.:..:.          ...:.:.|.|:  .:|.|..:|.:||||||||||:.||:
  Rat   457 PGANPQLEWQYYQNKLLKGKAADIPDSSVWENQDSAQ--TNGIDSVLSKAEIASCSYEARQVGIK 519

  Fly   373 NGMFVGQALKLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVD 437
            ||||.|.|.:|||.|:.:||||...:|||..||:|:|.||.:||||||||..:::||:..|..:.
  Rat   520 NGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLS 584

  Fly   438 VMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLL--DSSNDILAYMAPMSLDL 500
            ...|.:.||.|:.:||.|..|.|:..|.||||||||:|||:||:.|  |..:|.:......|   
  Rat   585 PEEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTS--- 646

  Fly   501 LPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVS 565
            |||||.|:..||...|:..|||:|..|:.|::|..|.|.||.|::.|||:||||:..|:.||:||
  Rat   647 LPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVS 711

  Fly   566 AEMNFGIRFTNSVECEQFLCQLSEEVTKRLVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCD 630
            ||:|:|||||...|.|.||..||.|:..||.....|.:.:.||||||...||:||:|:.|||:||
  Rat   712 AEINYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICD 776

  Fly   631 IINKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDAN--------------- 680
            .|.::..:..|||...:|....|::.....:...::||:||.:.:|..||               
  Rat   777 NIARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVHQLVPANLHPSTCSSRPSAQSS 841

  Fly   681 -----------------------------------EV---------------------------- 682
                                               ||                            
  Rat   842 LFSGLPHSVRDLFQLQKAKKPTEEEHNEGLAAVDLEVSSNSRACGLLSPPSAHLATVSPDANRGE 906

  Fly   683 --RKENNIKEMFGKMSEMRKDKPIPQGAVGDKSI--------------------GDDKVNK---- 721
              ||.|.:....|..|.:.....:|..:..|:|:                    |:.:.:|    
  Rat   907 CSRKWNGLHSPIGGQSRLNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKKKEP 971

  Fly   722 -----------PL--VFENKPKPREPRNVLSMLTAAAVSRKSVTEDRSQRGTSKPITRPLSLVPK 773
                       |:  |....|:|:||.|..:.::..|                      |....:
  Rat   972 VNGCSSGVLPHPVGTVLLQIPEPQEPNNSDTRISVIA----------------------LPAFSQ 1014

  Fly   774 LDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYRSPQYPTLRSPPLLNPYVTTNVSPLKATDLKP 838
            :|.||.|.||.:::.|:.|..::.....|....:.|...::...|||              .|||
  Rat  1015 VDPDVFAALPAELQKELKAAYDQRQRQGEDTTQQQPASTSVPKNPLL--------------QLKP 1065

  Fly   839 STSRAAVARLQKRKERKEQEHYIRSDQIVADYIDDLPDFVNPHILKLISHPVE------------ 891
            .      |...||.:||......|..|.:.. ....|..:....|:....|:|            
  Rat  1066 P------AMKDKRNKRKNPIGSPRKIQSLPG-TSGSPQKLMDGFLQHEERPLEEVSASTPGAQSL 1123

  Fly   892 ---------------MPELLMGDNYKD---LLNDWVSREEVPKPNDVDLILKQVSRMIKNDQLDH 938
                           .|.|.....:.|   ||.:|::....|...|:..::|..:.:|:...|:.
  Rat  1124 SGLQCGSQSSCFRPAAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEK 1188

  Fly   939 VCDVMKYWCRIINMKRSSSCCWHVAYKHIEESIQ 972
            :..|:||..|:  |::|....|::|:..|.:::|
  Rat  1189 LDLVIKYMKRL--MQQSVESVWNMAFDFILDNVQ 1220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351 36/82 (44%)
PolY_Rev1 218..676 CDD:176455 205/485 (42%)
Rev1_C 890..985 CDD:213388 22/113 (19%)
Rev1NP_001381058.2 BRCT_Rev1 48..131 CDD:349351 38/83 (46%)
PolY_Rev1 346..822 CDD:176455 189/594 (32%)
Rev1_UBM2 927..960 CDD:412037 8/32 (25%)
Rev1_UBM2 1004..1039 CDD:412037
Rev1_C 1140..1233 CDD:213388

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