DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rev1 and Polh

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_001101674.1 Gene:Polh / 316235 RGDID:1309893 Length:689 Species:Rattus norvegicus


Alignment Length:734 Identity:153/734 - (20%)
Similarity:252/734 - (34%) Gaps:244/734 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 IDMDCFFVSVGLRTRPELRGLPIAVTHS---KGGNAATDVPVHPQADRKAELELFAQRFEHHFHD 339
            :|||||||.|..|..|.||..|.||...   |||.                              
  Rat    12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGG------------------------------ 46

  Fly   340 GDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPY-------DFEGY 397
                               |.:.|||||..|:...|:...|.||||:|.....       :...|
  Rat    47 -------------------IIAVSYEARAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKY 92

  Fly   398 KEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHE---------LNVDVM-------------- 439
            :|.:..:.:.::.:.: ||..|.||.:::||:...|         ::.|::              
  Rat    93 REASVEVMEIMSHFAV-IERASIDEAYIDLTNAVQERLEKLQGQPVSADLLPSTYIEGLPRGPAV 156

  Fly   440 -------------------------------------AFVSHLRQEVYSKTGCPCSAGVAGNKLL 467
                                                 ..|..:|..:..|||..||||::.||:|
  Rat   157 EDTVEKEDIRKQGLLQWLGSLEKDDPTSPDLRLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVL 221

  Fly   468 ARMATKEAKPNGQFLLD--SSNDILAYMAPMSLDLLPG-VGSSISHKLKQAGLNNCGDVQNTTLE 529
            |::|....|||.|.|:.  |...:.:.|....:..|.| :|:|:...|   |:...||:...|..
  Rat   222 AKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIDVL---GVEYMGDLTQFTEA 283

  Fly   530 KMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNF--GIRFTNSVECEQFLCQLSEEVT 592
            :::...|:|.|..|:..||||:..|:...|:.||:....||  ........:.:.:|.||:.|:.
  Rat   284 QLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELE 348

  Fly   593 KRLVEIR----RKARSINLKIMVR------AAEAPVETSKYMGHGV----------CDIINKSSL 637
            :||.:.|    |.|..:.:.|.|.      :.......::|..|.:          |   |.|.:
  Rat   349 ERLTKDRTDNGRVATQLVVSIRVEGDKRLSSLRRCCALTRYDAHKMSQDAFATIRNC---NTSGV 410

  Fly   638 ---------------IKYATDDVNVITTVVLDLMKDADIPPD-ELRGLGIHLTRLEDANEVRKE- 685
                           .|::.......|.:.:.|..|:...|. .....|........|....|| 
  Rat   411 QTEWSPPLTMLFLCATKFSASAPPACTDITVFLSSDSGCQPKVPAASSGTRTQEPGPAAPTSKEA 475

  Fly   686 -NNIKEMF---GKMSEMRKDKPIPQGAVGDKSIGDDKVNKP-LVFENKPKPREPRNVLSMLTAAA 745
             .:::..|   .|...||:...:|.....:||     .:|| |:|:....|.         |.:.
  Rat   476 ATSLESFFQKAAKRQRMRETSFVPPKVAVEKS-----SSKPSLLFQTSGSPG---------TKSF 526

  Fly   746 VSRKSVT---EDRSQRGTSKPITRPLSLVPKLDEDVLAQLPEDIRLEVIANREEHLCIAEYDGYR 807
            ..:||:.   .:.|......|.....::.|       ::||.| |.:..|:.|| :|        
  Rat   527 FKQKSLLLQHTELSNAAAPCPPQASSAVQP-------SRLPTD-RADSRASCEE-VC-------- 574

  Fly   808 SPQYPTLRSPPLLNPYVTTNVSPLKATDL----KPSTSRAAVARLQKRKERKEQEHYIRSDQIVA 868
                     .|:.:..|:|.|:....:.|    :..|.|||                  .||::.
  Rat   575 ---------KPVSSKAVSTEVNVAGNSSLAYNSQEMTQRAA------------------EDQVLC 612

  Fly   869 DYID------DLPDFVNPH 881
            :..|      |:|:.::.|
  Rat   613 EKCDSLVPVWDMPEHLDYH 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 109/508 (21%)
Rev1_C 890..985 CDD:213388
PolhNP_001101674.1 PolY_Pol_eta 10..427 CDD:176456 103/470 (22%)
zf_UBZ 608..638 CDD:465769 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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