DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rev1 and Poli

DIOPT Version :10

Sequence 1:NP_612047.1 Gene:Rev1 / 38079 FlyBaseID:FBgn0035150 Length:995 Species:Drosophila melanogaster
Sequence 2:XP_063133258.1 Gene:Poli / 291526 RGDID:1305212 Length:788 Species:Rattus norvegicus


Alignment Length:791 Identity:174/791 - (21%)
Similarity:294/791 - (37%) Gaps:223/791 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 AGFKQYVCRLRQKHGTQGFPKRETLKSLANSHHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPI 300
            ||..:.||       .||.|.|     :|:|      |.::|:|:|||:..|.:.:.|||:..|:
  Rat    29 AGGSRAVC-------DQGAPSR-----IASS------RVIVHVDLDCFYAQVEMISNPELKDKPL 75

  Fly   301 AVTHSKGGNAATDVPVHPQADRKAELELFAQRFEHHFHDGDKAEKVRSGFDKKMSLSEIASCSYE 365
            .|                           .|::                        .:.:|:||
  Rat    76 GV---------------------------QQKY------------------------LVVTCNYE 89

  Fly   366 AREKGIRNGMFVGQALKLCPELKTI-PYDFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTD 429
            ||:.|::..|.|..|.:.||:|..: ..|...|:|:::.:.:.:.:::..:|.:..||.||:||:
  Rat    90 ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTE 154

  Fly   430 LA----HELNVDVMAFV-----------------SHLRQEVYSK---------------TGCPCS 458
            :.    .:|..|.:..|                 :|:|..|.|:               |||   
  Rat   155 MVEKRLQQLPSDEVPSVTMSGHVYNNQSVNLHSSTHVRLAVGSQIAAEMREAMHNQLGLTGC--- 216

  Fly   459 AGVAGNKLLARMATKEAKPNG---------QFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQ 514
            ||||.|||||::.:...|||.         |.|:.|.|.|..         :||:|...:.:|:.
  Rat   217 AGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKE---------MPGIGYKTAKRLEV 272

  Fly   515 AGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVE 579
            .|:|:..|:|...::.:||.||..:.|.:.:...|.|..|:......::.|.|..|. :.::.||
  Rat   273 LGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPVTPSGPPQSFSEEDTFK-KCSSEVE 336

  Fly   580 CEQFLCQLSEEVTKRLVEIRRKARSINLKIM----------VRAAEAPVETSKYMGHGVCDIIN- 633
            .:..:.:|...:..|:....||..:|.|.|.          .|....|....:.:|.|..|.:. 
  Rat   337 AKTKIEELLSSLLNRVCHDGRKPHTIRLVIRRYSDKHCNRESRQCPIPSHVIQKLGTGNYDAVPP 401

  Fly   634 -KSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDANEVRKENNIKEMFGKMSE 697
             ...|:|...:.|||.....|.|             |.:....|:..|..:|        |.|..
  Rat   402 LMEILMKLFRNMVNVKMAFHLTL-------------LSVCFCNLKALNSAKK--------GPMDC 445

  Fly   698 MRKDKPIPQGAVGDKSIGDDKVNKPLVFENKPKPRE-------PRNVLSMLTAAAVSRKSVTEDR 755
            ............|.:|.   || |.:..|:..|.:|       .|.:.|  |....|....|...
  Rat   446 FLTSSLSTTACSGKRSF---KV-KDIHMEDSYKEKEANWDCLPSRRIES--TRRGESPSDATCFP 504

  Fly   756 SQRGTSKPITRPLSLVPK-LDEDVLAQLPEDIRLEVIANR-EEHLCIAEYDGYRSPQYPTLRSPP 818
            .::.||   ..||..:|: :|::|..|||.||:.|:::.: .|:|     .|..|...|...|..
  Rat   505 KEKDTS---DLPLQFLPEGVDQEVFTQLPADIQEEILSGKSRENL-----QGKGSLSCPLHASRG 561

  Fly   819 LLNPYVT--TNVSPLKATD-------------LKPSTSRAAVARLQKRKERKEQEHYIRSDQIVA 868
            :|:.:.|  |....|...|             .:|.||..:.:........|:..:|: .:|:..
  Rat   562 VLSFFSTKQTQAGCLSPRDTLLTGKQASAVSPCEPGTSGLSTSSSSHPSCGKDCSYYV-DNQLKD 625

  Fly   869 DYIDDLP--------DFVNPHILKLISHPVEMPELLM-----GDNYKDLL----------NDWVS 910
            :.:...|        ...||.:....|.|....|.|.     .|::|...          ....:
  Rat   626 ERMSQGPTESQGFHFSNTNPAVSVFHSFPNLQSEQLFSTHRTADSHKQTATTSHQGLENREQDSA 690

  Fly   911 REEVPKPNDVD 921
            .|::..|:|:|
  Rat   691 DEKLTFPSDID 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rev1NP_612047.1 BRCT_Rev1 39..121 CDD:349351
PolY_Rev1 218..676 CDD:176455 113/497 (23%)
Rev1_C 890..985 CDD:213388 8/47 (17%)
PoliXP_063133258.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.