DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gol and RING1

DIOPT Version :10

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_196600.1 Gene:RING1 / 830902 AraportID:AT5G10380 Length:301 Species:Arabidopsis thaliana


Alignment Length:291 Identity:79/291 - (27%)
Similarity:117/291 - (40%) Gaps:84/291 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 RTISSLNRTSVLFVSISFIVLMIISLVWLIFYYIQRFRYMQAKDQQSRNLCSVT----------- 278
            |.:|.|..||:.      :|..||..::|:|     |.|:....|:..:..|||           
plant    36 RELSLLLPTSIC------VVGSIILFLFLVF-----FLYLHITQQRRISAASVTPGDTNQQEDED 89

  Fly   279 ----------------------KKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILP- 320
                                  :.||..| |..|....|..:|...|::|:..::..:::|:|| 
plant    90 ETEERDFSDFHHVWQIPTVGLHRSAINSI-TVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPK 153

  Fly   321 CKHEFHKNCIDPWLIEHRTCPMCKLDVLKFYGYVFLGSE----ESILEYQPDPPQGLALVEARDE 381
            |.|.||.||||.||:.|:.||:|:..||       |.:|    |:...:|||......|...:|.
plant   154 CSHAFHLNCIDTWLLSHKNCPLCRAPVL-------LITEPPHQETETNHQPDSESSNDLRGRQDS 211

  Fly   382 SADLNRS-RDFVVDFPRV-FVLDSGCVVGAREMLFPCRIPERSQS---SLSL--------RQARD 433
            |    || |:..:..||. ..|.:.|..|..|.:      .||.|   ||||        |..|.
plant   212 S----RSRRNHNIFLPRAQSDLANYCGSGRVENV------RRSFSIGGSLSLCDGINNATRSGRQ 266

  Fly   434 WVSLMSNKLEEQQGLRSMRNDE--MQQQLLS 462
            :.:..|..|....  |.:||::  .|.|:.|
plant   267 FYTSFSANLFSSS--RRVRNEQPIPQNQMPS 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
HRD1 <237..>347 CDD:227568 37/143 (26%)
RING-H2_RNF130-like 302..347 CDD:438330 19/45 (42%)
RING1NP_196600.1 RING-H2_EL5-like 134..177 CDD:438124 18/42 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.