DRSC/TRiP Functional Genomics Resources

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Protein Alignment gol and AT2G42360

DIOPT Version :10

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_181765.1 Gene:AT2G42360 / 818837 AraportID:AT2G42360 Length:236 Species:Arabidopsis thaliana


Alignment Length:157 Identity:45/157 - (28%)
Similarity:68/157 - (43%) Gaps:31/157 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 SISFIVLMIISLVWLIFYYIQRFR---------YMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSD 294
            |:|.::|::.:|.....:.::|.|         :....:...|.|   ....|..:||.|...:|
plant    38 SLSGVILIVFALHLYARFVLRRRREAFRGLPVIFRHPFEMPKRGL---NPTVIASLPTFTVGATD 99

  Fly   295 EKDLDSDCCAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLIEHRTCPMCKLDVLKFYGYVFLGS 358
            .....:..||:|:...|..|..|.|| |||.||.:|:|.||....|||:|:.:|           
plant   100 GVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV----------- 153

  Fly   359 EESILEYQPDP---PQGLA---LVEAR 379
             |.....:|:|   |.|.|   |||.|
plant   154 -EPRPRLEPEPREGPVGTAPQLLVETR 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
HRD1 <237..>347 CDD:227568 34/117 (29%)
RING-H2_RNF130-like 302..347 CDD:438330 21/45 (47%)
AT2G42360NP_181765.1 COG5540 <54..155 CDD:227827 31/115 (27%)
RING-H2_EL5-like 107..150 CDD:438124 20/42 (48%)
Blue background indicates that the domain is not in the aligned region.

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