DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gol and rnf38

DIOPT Version :10

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_695200.4 Gene:rnf38 / 566820 ZFINID:ZDB-GENE-030131-8693 Length:673 Species:Danio rerio


Alignment Length:70 Identity:25/70 - (35%)
Similarity:42/70 - (60%) Gaps:1/70 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 VTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCP 341
            :||..|.::|:.....|:.:. :...|.:|:..::....:|:|||.||||..|:|.||..:||||
Zfish   596 LTKADIEQLPSYRFNPSNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCP 659

  Fly   342 MCKLD 346
            :|:.|
Zfish   660 ICRAD 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
HRD1 <237..>347 CDD:227568 25/70 (36%)
RING-H2_RNF130-like 302..347 CDD:438330 20/45 (44%)
rnf38XP_695200.4 RING-H2_RNF38 599..665 CDD:438341 23/67 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.