DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NaCP60E and Cacna1s

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_446325.1 Gene:Cacna1s / 682930 RGDID:70983 Length:1850 Species:Rattus norvegicus


Alignment Length:2879 Identity:562/2879 - (19%)
Similarity:946/2879 - (32%) Gaps:1264/2879 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 KSLFLFYPWSPARRVCVYIATNQFFDYCVMATILFNC----IFLAMTET--------VEEAEYIF 156
            ::||.....:|.|:.|:.:...:.|:..::.||..||    ::|.|.|.        :|:.||.|
  Rat    29 RALFCLTLQNPLRKACISVVEWKPFETIILLTIFANCVALAVYLPMPEDDNNTLNLGLEKLEYFF 93

  Fly   157 LAIYSIEMVIKIIAKGFLLNKYTYLRNPWNWLDFVVITSGYATIGMEVGNL------------AG 209
            |.::|||..:||||.|||.::..|||:.||.|||:::..|..|..:|..|:            ||
  Rat    94 LIVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTAILEQVNIIQTNTAPMSSKGAG 158

  Fly   210 -----LRTFRVLRALKTVSIMPGLKTIINALLHSFRQLAEVMTLTIFCLMVFALFALQVYMGELR 269
                 ||.|||||.|:.||.:|.|:.::|::..:...|..:..|.:|.::::|:..|:::.|::.
  Rat   159 LDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYAIIGLELFKGKMH 223

  Fly   270 NKCVRQVPTDWTNVSHTDWQIWVNDTDNWLYDEDELPVLCGNLTGARHCPFE-YVCLCVGENPNH 333
            ..|                  :...||.....|:|.|..|......|.|... ..|......|||
  Rat   224 KTC------------------YFIGTDIVATVENEKPSPCARTGSGRPCTINGSECRGGWPGPNH 270

  Fly   334 GYTNFDNFMWSMLTTFQLITLDYWENVYNMVLATCG---PMSVSFFTVVVFFGSFYLINLMLAVV 395
            |.|:||||.:||||.:|.|:::.|.:|...|....|   |.  .:|..::..|||:::||:|   
  Rat   271 GITHFDNFGFSMLTVYQCISMEGWTDVLYWVNDAIGNEWPW--IYFVTLILLGSFFILNLVL--- 330

  Fly   396 ALSYEEEAEITNEERKKDLLDHRDDSTFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASYSKKKTR 460
                                                                |||...::|::.:
  Rat   331 ----------------------------------------------------GVLSGEFTKEREK 343

  Fly   461 RKKTKGGKEGGTNGNGNGSNGDDNKSHSATPSPGPSPRHSATERPSALTMQAQKQYQQMEQQHKL 525
            .|                |.|                           |.|..::.||:|:    
  Rat   344 AK----------------SRG---------------------------TFQKLREKQQLEE---- 361

  Fly   526 AKSGSGGSNNPMAPTPKGRISFQDSGMGVKNPNMLYPSDYKGQLIANSGQPSSNSSGVNRESSQD 590
                                                  |.:|.:           |.:.:....|
  Rat   362 --------------------------------------DLRGYM-----------SWITQGEVMD 377

  Fly   591 DSGVVDDHEEQDTTNDMGHVSTVELALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDD 655
                |||..|...:.|.|...|..|                     :.:..|::       :|..
  Rat   378 ----VDDLREGKLSLDEGGSDTESL---------------------YEIEGLNK-------IIQF 410

  Fly   656 LPD-RNCDRCVHW-CTDYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMSESFRN 718
            :.. |..:|...| |.|             :|:..:|...:.|.:.|||..:|.|||.......:
  Rat   411 IRHWRQWNRVFRWKCHD-------------LVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTH 462

  Fly   719 ALDVGNKVFTSIFTFECIVKLMALS-KDFFLCGWNIFDLLIVTASLLDIIFELVD-------GLS 775
            ..||.|:|..::||.|.::|:..|. :.:|:..:|.||..:|.:.:|:|:  ||:       |:|
  Rat   463 LQDVANRVLLALFTIEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEIL--LVESGAMTPLGIS 525

  Fly   776 VLRGLRLLRVLKLAQSWTTMKVLLSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTPEKF 840
            |||.:||||:.|:.:.||::..|::.::::|.::.:|.|:|.:.:.|||::|||||...|   .|
  Rat   526 VLRCIRLLRLFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFMIIFALLGMQLFGGRY---DF 587

  Fly   841 DPDPVPRWNFNDFFHSFMMIFRILCGE-WIEPLWDCMRA---EEEQGASTCFAIFLPTLVMGNFM 901
            :...|.|.||::|..:.:.:|::|.|| |...:::.:.|   ....|...|. .|:...|.||::
  Rat   588 EDTEVRRSNFDNFPQALISVFQVLTGEDWNSVMYNGIMAYGGPSYPGVLVCI-YFIILFVCGNYI 651

  Fly   902 VLNLFLALLL-NSFNSEELKSKKEEVGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQI 965
            :||:|||:.: |...:|.|.|.:                    :.|.:|||.||           
  Rat   652 LLNVFLAIAVDNLAEAESLTSAQ--------------------KAKAEERKRRK----------- 685

  Fly   966 VLDAQQAHAQTLSHQAAVGLERGDKPGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTI 1030
                               :.||                                          
  Rat   686 -------------------MSRG------------------------------------------ 689

  Fly  1031 VDGLEYDDTGDLPEQIQLQAHPLPPTSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAE 1095
                       ||::                                                  
  Rat   690 -----------LPDK-------------------------------------------------- 693

  Fly  1096 RRLQHQISSGVSTQQYDSREEATYTESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSR 1160
                                                                             
  Rat   694 ----------------------------------------------------------------- 693

  Fly  1161 RYGSEEHDEAFLKYQKSLLTRSPSYRKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSI 1225
               |||        ::|.:|      |.|::..:..|....:.||.:|                 
  Rat   694 ---SEE--------ERSTMT------KKLEQKPKGEGIPTTAKLKIDE----------------- 724

  Fly  1226 EQDELLSQQGNLREELLNCDQKELFQFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMV 1290
                                                                             
  Rat   725 ----------------------------------------------------------------- 724

  Fly  1291 EHSEFDNIIQSFEKELEEIKRSTTSLERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADE 1355
                       ||..:.|:|              :|.|:||                        
  Rat   725 -----------FESNVNEVK--------------DPYPSAD------------------------ 740

  Fly  1356 VVLPLNPYDSYDLSSVPRRSQSVSAAAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAP 1420
                 .|.|                                    ||                  
  Rat   741 -----FPGD------------------------------------DE------------------ 746

  Fly  1421 FVAMEAMAVAATSASQAQPNQSPFLRRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIES 1485
                                                                |:|          
  Rat   747 ----------------------------------------------------EDE---------- 749

  Fly  1486 EKMPRKFLHGPDQLRLDSLSLKSTNSYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQI 1550
                                                      |.:||:|        .|..||::
  Rat   750 ------------------------------------------PEIPASP--------RPRPLAEL 764

  Fly  1551 SSLKTTPPLAALTEHQQHFHATSIQAAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQ 1615
            .          |.|          :|.|.|                                   
  Rat   765 Q----------LKE----------KAVPIP----------------------------------- 774

  Fly  1616 SARTESHSSGAADASSALALAMAQKTEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGG 1680
                        :|||                                                 
  Rat   775 ------------EASS------------------------------------------------- 778

  Fly  1681 RRNSQGAYNDPMTFPSYGATKAAKVPDDCFPQKCYDHFYFRCPWFMSCMDTQSAKHWTRVRTAVL 1745
                                                 |:...|             ..::|....
  Rat   779 -------------------------------------FFIFSP-------------TNKIRVLCH 793

  Fly  1746 TVVDTPAFEWFVLVLIFASSITLCFED-INLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGF 1809
            .:|:...|..|:|:.|..||..|..|| |..|..:  .::|.:.::.|..:|.||::||....|.
  Rat   794 RIVNATWFTNFILLFILLSSAALAAEDPIRADSMR--NQILEYFDYVFTAVFTVEIVLKMTTYGA 856

  Fly  1810 ----SKYFTSFWTILDFIIVFVSVFSLLIEENENLKVLRSLRTLRALRPLRAISRWQGMRIVVNA 1870
                ..:..:::.|||.::|.||:.|:.:|.:. :.|::.||.||.|||||||:|.:|::.||..
  Rat   857 FLHKGSFCRNYFNILDLLVVAVSLISMGLESSA-ISVVKILRVLRVLRPLRAINRAKGLKHVVQC 920

  Fly  1871 LMYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFKCVNEMGELLPITEVNDKWDCIEQNY---- 1931
            :..||.:|.|::||..:...:|:.:|||.|.|||:.|    .:|..:||.    :|....|    
  Rat   921 VFVAIRTIGNIVLVTTLLQFMFACIGVQLFKGKFYSC----NDLSKMTEE----ECRGYYYIYKD 977

  Fly  1932 -----------TWINSKITFDHVGMGYLALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAY 1985
                       .||::...||:|....::|..|:|||||.:::..|:|:...|..|.....:...
  Rat   978 GDPTQIELRPRQWIHNDFHFDNVLSAMMSLFTVSTFEGWPQLLYKAIDSNEEDTGPVYNNRVEMA 1042

  Fly  1986 IYFVIFIVCGSFFTLNLFIGVIIDNFNMLKKKYEGGVLEMFLTESQKHYYTAMKKLGRKKPQK-- 2048
            |:|:|:|:..:||.:|:|:|.:|..|.      |.|..|....|..|:....::...:.:|.:  
  Rat  1043 IFFIIYIILIAFFMMNIFVGFVIVTFQ------EQGETEYKNCELDKNQRQCVQYALKARPLRCY 1101

  Fly  2049 VIKRPINHFLAMFYDLSNSRRFEIAIFVLIFLNMLTMGIEHYDQPHAVFFILEVSNAFFTTVFGL 2113
            :.|.|..:  .::|.:::| .||..:|.||.||.:.:|::||:|...:..|.::.|..||.:|.|
  Rat  1102 IPKNPYQY--QVWYVVTSS-YFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTL 1163

  Fly  2114 EAIVKIVGLRYH-YFTVPWNVFDFLLVLASIFGILMEDIMIDLPISPTL---------------L 2162
            |.|:|::..:.. ||..||||||||:|:.||..:::.:|...|..|..|               .
  Rat  1164 EMILKLIAFKPRGYFGDPWNVFDFLIVIGSIIDVILSEIDTLLASSGGLYCLGGGCGNVDPDESA 1228

  Fly  2163 RV----VRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLGLITFIYAILGMSLFGNVK 2223
            |:    .|:||:.|:::|:..|:|:|.||:..:.|..||..:..|:.::.||||::||.:||.:.
  Rat  1229 RISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIA 1293

  Fly  2224 LQGA--LDDMVNFQTFGRSMQLLFRLMTSAGWNDVLESLMIQPPDCDP---FIHGHTNGNCGHPL 2283
            :...  ::...|||||.:::.||||..|...|.::|.:.. ....|||   :..|.... || ..
  Rat  1294 MVDGTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACS-YGKRCDPESDYAPGEEYA-CG-TN 1355

  Fly  2284 LAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIRWSKYDPHATQFIHF 2348
            .|..||.||.::...::||:::|:|::||:...::..| :....|:.|...|::|||.|...|..
  Rat  1356 FAYYYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSI-LGPHHLDEFKAIWAEYDPEAKGRIKH 1419

  Fly  2349 SQLSDFIASLDPPLGISK--PNNVA---LVSFNLPISKGNKIHCLDILHALVKHVLGHVEETDNF 2408
            ..:...:..:.||||..|  |:.||   ||..|:|::....:.....|.|||:..| .::...||
  Rat  1420 LDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTAL-KIKTEGNF 1483

  Fly  2409 KQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEK---------------------AAKTIQTGW 2452
            :|..|::....||               ||||...                     |...||..:
  Rat  1484 EQANEELRAIIKK---------------IWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQEHF 1533

  Fly  2453 KEYLRRKREKERSNSGDSATQTSSPGGWQSKLSALNFFHLQVSRRGTACSSRASSRKSSRASDAS 2517
            :::::|:.|..               |::.|...:   .:|...|                    
  Rat  1534 RKFMKRQEEYY---------------GYRPKKDTV---QIQAGLR-------------------- 1560

  Fly  2518 DLSELAGPWLNLPLMLVSG----ADEVVKDIKQQNDELG---KRGSIFVEA-----------PRA 2564
            .:.|.|.|.::   ..:||    .:|:.:.:.:...|.|   :.|.:|.:.           |..
  Rat  1561 TIEEEAAPEIH---RAISGDLTAEEELERAMVEAAMEEGIFRRTGGLFGQVDNFLERTNSLPPVM 1622

  Fly  2565 SRRR--SFYNFFLRHQDA---VDDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASST-------- 2616
            :.:|  .|....:...::   ::|...:|..| ..|..||.|..:|.|..:.:..::        
  Rat  1623 ANQRPLQFAEMEMEELESPVFLEDFPQNPGTH-PLARANTNNANANVAYGNSSHRNSPVFSSIRY 1686

  Fly  2617 -------ATAPATGCGPAATSASDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVN 2674
                   |..|.|..||.:...|.|         ...||.....       |||.:|.:.     
  Rat  1687 ERELLEEAGRPVTREGPFSQPCSVS---------GVNSRSHVDK-------LERQMSQRR----- 1730

  Fly  2675 KNAFVSEASAPEVIVTRPSP---EQQTHPHSLSLRPDNATLVHVLVHRE-------------SEE 2723
                :.:...|      |||   .|:.||                ||.|             ||.
  Rat  1731 ----MPKGQVP------PSPCQLSQEKHP----------------VHEEGKGPRSWSTETSDSES 1769

  Fly  2724 YKEEDE-------SSPS---------VSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAM 2772
            ::|...       ::|:         |.|       |||.|:..  ....:.||  ::..|.|.|
  Rat  1770 FEERVPRNSAHKCTAPATTMLIQEALVRG-------GLDSLAAD--ANFVMATG--QALADACQM 1823

  Fly  2773 PTVQIMV--------DSPK 2783
            ...::.|        :|||
  Rat  1824 EPEEVEVAATELLKRESPK 1842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 85/278 (31%)
Ion_trans 687..902 CDD:459842 71/226 (31%)
Ion_trans 1751..2019 CDD:459842 90/287 (31%)
Na_channel_gate 2009..2063 CDD:240441 9/55 (16%)
Ion_trans 2067..2320 CDD:459842 90/277 (32%)
GPHH 2332..2378 CDD:465306 17/50 (34%)
Cacna1sNP_446325.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
I. /evidence=ECO:0000305 38..337 99/373 (27%)
Ion_trans 50..345 CDD:459842 97/369 (26%)
Selectivity filter of repeat I. /evidence=ECO:0000250|UniProtKB:P07293 290..293 0/2 (0%)
Binding to the beta subunit. /evidence=ECO:0000250|UniProtKB:Q02789 357..374 6/69 (9%)
II. /evidence=ECO:0000305 418..664 81/264 (31%)
Ion_trans 431..672 CDD:459842 79/246 (32%)
Selectivity filter of repeat II. /evidence=ECO:0000250|UniProtKB:P07293 612..615 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 673..717 18/278 (6%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 731..758 16/235 (7%)
III. /evidence=ECO:0000305 786..1068 91/292 (31%)
Ion_trans 798..1075 CDD:459842 92/293 (31%)
Dihydropyridine binding. /evidence=ECO:0000250|UniProtKB:P07293 988..1077 30/94 (32%)
Selectivity filter of repeat III. /evidence=ECO:0000250|UniProtKB:P07293 1012..1015 2/2 (100%)
IV. /evidence=ECO:0000305 1105..1384 90/284 (32%)
Ion_trans 1117..1392 CDD:459842 90/278 (32%)
Selectivity filter of repeat IV. /evidence=ECO:0000250|UniProtKB:P07293 1321..1324 1/2 (50%)
Dihydropyridine binding. /evidence=ECO:0000250|UniProtKB:P07293 1337..1403 19/68 (28%)
Phenylalkylamine binding. /evidence=ECO:0000250|UniProtKB:P07293 1349..1391 13/43 (30%)
GPHH 1401..1454 CDD:465306 18/52 (35%)
Ca_chan_IQ 1464..1536 CDD:462591 18/87 (21%)
Interaction with calmodulin. /evidence=ECO:0000250|UniProtKB:Q13698 1522..1542 4/19 (21%)
CAC1F_C 1557..1838 CDD:465298 62/362 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1697..1779 25/128 (20%)
Blue background indicates that the domain is not in the aligned region.

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