DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and SCN4A

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_000325.4 Gene:SCN4A / 6329 HGNCID:10591 Length:1836 Species:Homo sapiens


Alignment Length:2613 Identity:822/2613 - (31%)
Similarity:1142/2613 - (43%) Gaps:911/2613 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DEKAVAKHQVVAYTQRSQVKHENRHIQLVREYGFHPRTKASVEDGDVLPRKFEPFPEHMYGKPLE 74
            :::||.:...:...::.:::...|            :.::.:|.|..||..:...|..:.|.|||
Human    29 EQRAVEEEARLQRNKQMEIEEPER------------KPRSDLEAGKNLPMIYGDPPPEVIGIPLE 81

  Fly    75 EIDTFI-YEETFCVVSKRFRKNYIHRFTGTKSLFLFYPWSPARRVCVYIATNQFFDYCVMATILF 138
            ::|.:. .::||.|::|   ...|.||:.|.:|:|..|:|..||..:.:..:..|...:|.|||.
Human    82 DLDPYYSNKKTFIVLNK---GKAIFRFSATPALYLLSPFSVVRRGAIKVLIHALFSMFIMITILT 143

  Fly   139 NCIFLAMTET---VEEAEYIFLAIYSIEMVIKIIAKGFLLNKYTYLRNPWNWLDFVVITSGYATI 200
            ||:|:.|::.   .:..||.|..||:.|.:|||:|:||.::.:|:||:|||||||.||...|.|.
Human   144 NCVFMTMSDPPPWSKNVEYTFTGIYTFESLIKILARGFCVDDFTFLRDPWNWLDFSVIMMAYLTE 208

  Fly   201 GMEVGNLAGLRTFRVLRALKTVSIMPGLKTIINALLHSFRQLAEVMTLTIFCLMVFALFALQVYM 265
            .:::||::.||||||||||||::::||||||:.||:.|.::|::||.||:|||.||||..||::|
Human   209 FVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQLFM 273

  Fly   266 GELRNKCVRQVP------TDW----------------------------TNVSHTDWQIWVNDTD 296
            |.||.||||..|      |.|                            |..||..|.  .|||.
Human   274 GNLRQKCVRWPPPFNDTNTTWYSNDTWYGNDTWYGNEMWYGNDSWYANDTWNSHASWA--TNDTF 336

  Fly   297 NW-LYDEDE----------LPVLCGNLTGARHCPFEYVCLCVGENPNHGYTNFDNFMWSMLTTFQ 350
            :| .|..||          ..:||||.:.|.|||..|.|:..|.|||:|||::|.|.|:.|..|:
Human   337 DWDAYISDEGNFYFLEGSNDALLCGNSSDAGHCPEGYECIKTGRNPNYGYTSYDTFSWAFLALFR 401

  Fly   351 LITLDYWENVYNMVLATCGPMSVSFFTVVVFFGSFYLINLMLAVVALSYEEEAEITNEERKKDLL 415
            |:|.|||||::.:.|...|...:.||.|::|.||||||||:|||||::|.|:.|.|..|      
Human   402 LMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAEQNEATLAE------ 460

  Fly   416 DHRDDSTFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASYSKKKTRRKKTKGGK--EGGTNGNGNG 478
            |...:..|.                        .:|..:.|.:...:|.|..:  |||.      
Human   461 DKEKEEEFQ------------------------QMLEKFKKHQEELEKAKAAQALEGGE------ 495

  Fly   479 SNGDDNKSHSATPSPGPSPRHSATERPSALTMQAQKQYQQMEQQHKLAKSGSGGSNNPMAPTPKG 543
            ::||              |.|.                                           
Human   496 ADGD--------------PAHG------------------------------------------- 503

  Fly   544 RISFQDSGMGVKNPNMLYPSDYKGQLIANSGQPSSNSSGVNRESSQDDSGVVDDHEEQDTTNDMG 608
                               .|..|.|..:.|:     .|..|:||..|||:.|..||.:..    
Human   504 -------------------KDCNGSLDTSQGE-----KGAPRQSSSGDSGISDAMEELEEA---- 540

  Fly   609 HVSTVELALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDDLPDRNCD----RCVH--- 666
                                              ||:               |.    :|.|   
Human   541 ----------------------------------HQK---------------CPPWWYKCAHKVL 556

  Fly   667 -W--CTDYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMSESFRNALDVGNKVFT 728
             |  |.   .||:|:|.::.:|.||..:|.||:||||||.|:||||:.|:|.|.|.|.|||.|||
Human   557 IWNCCA---PWLKFKNIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLTVGNLVFT 618

  Fly   729 SIFTFECIVKLMALSK-DFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSW 792
            .|||.|.::||:|:.. ::|..||||||.:|||.||:::....|.||||||..|||||.|||:||
Human   619 GIFTAEMVLKLIAMDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSW 683

  Fly   793 TTMKVLLSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTP--EKFDPD-PVPRWNFNDFF 854
            .|:.:|:.||.:::||||||||:|.|:::||||:|||||.|.|..  .|...| .:|||:.:|||
Human   684 PTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIALDCNLPRWHMHDFF 748

  Fly   855 HSFMMIFRILCGEWIEPLWDCMRAEEEQGASTCFAIFLPTLVMGNFMVLNLFLALLLNSFNSEEL 919
            |||:::||||||||||.:||||   |..|.:.|..:||..:|:||.:||||||||||:||:::.|
Human   749 HSFLIVFRILCGEWIETMWDCM---EVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSSFSADSL 810

  Fly   920 KSKKEEVGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQIVLDAQQAHAQTLSHQAAVG 984
            .:..|: ||.:.|..:|.|::..|             .||:.|...:|     |.:.||      
Human   811 AASDED-GEMNNLQIAIGRIKLGI-------------GFAKAFLLGLL-----HGKILS------ 850

  Fly   985 LERGDKPGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTIVDGLEYDDTGDLPEQIQLQ 1049
                                                                      |:.|.| 
Human   851 ----------------------------------------------------------PKDIML- 856

  Fly  1050 AHPLPPTSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAERRLQHQISSGVSTQQYDSR 1114
                                     |....:|.|                               
Human   857 -------------------------SLGEADGAG------------------------------- 865

  Fly  1115 EEATYTESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSRRYGSEEHDEAFLKYQKSLL 1179
                                                                             
Human   866 ----------------------------------------------------------------- 865

  Fly  1180 TRSPSYRKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSIEQDELLSQQGNLREELLNC 1244
                           .:|::..:..:.|:.|                                  
Human   866 ---------------EAGEAGETAPEDEKKE---------------------------------- 881

  Fly  1245 DQKELFQFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMVEHSEFDNIIQSFEKELEEI 1309
                     ..||:|:|                                  ||            
Human   882 ---------PPEEDLKK----------------------------------DN------------ 891

  Fly  1310 KRSTTSLERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADEVVLPLNPYDSYDLSSVPRR 1374
                                      .|:.|:.:..|               |..|.:|.     
Human   892 --------------------------HILNHMGLADG---------------PPSSLELD----- 910

  Fly  1375 SQSVSAAAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAPFVAMEAMAVAATSASQAQP 1439
                                                       |..|:                 
Human   911 -------------------------------------------HLNFI----------------- 915

  Fly  1440 NQSPFLRRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIESEKMPRKFLHGPDQLRLDSL 1504
             .:|:|..:|...:.:.|.           |:|.||:..:....|..|.|      |..|...:.
Human   916 -NNPYLTIQVPIASEESDL-----------EMPTEEETDTFSEPEDSKKP------PQPLYDGNS 962

  Fly  1505 SLKSTNSYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQISSLKTTPPLAALTEHQQHF 1569
            |:.||..|                              :||.                       
Human   963 SVCSTADY------------------------------KPPE----------------------- 974

  Fly  1570 HATSIQAAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQSARTESHSSGAADASSALA 1634
                                            |.|:                             
Human   975 --------------------------------EDPE----------------------------- 978

  Fly  1635 LAMAQKTEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGGRRNSQGAYNDPMTFPSYGA 1699
                   ||::.. |:..|....||....:.|.||  |||        .|||             
Human   979 -------EQAEEN-PEGEQPEECFTEACVQRWPCL--YVD--------ISQG------------- 1012

  Fly  1700 TKAAKVPDDCFPQKCYDHFYFRCPWFMSCMDTQSAKHWTRVRTAVLTVVDTPAFEWFVLVLIFAS 1764
                                             ..|.|..:|.|...:|:...||.|::.:|..|
Human  1013 ---------------------------------RGKKWWTLRRACFKIVEHNWFETFIVFMILLS 1044

  Fly  1765 SITLCFEDINLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGFSKYFTSFWTILDFIIVFVSV 1829
            |..|.||||.:::.:.::.:|.:.:..|..||::||:|||:|.||..|||:.|..|||:||.||:
Human  1045 SGALAFEDIYIEQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSI 1109

  Fly  1830 FSLLIE--ENENLKVLRSLRTLRALRPLRAISRWQGMRIVVNALMYAIPSIFNVLLVCLVFWLIF 1892
            .||:..  ....|..::|||||||||||||:||::|||:|||||:.|||||.|||||||:|||||
Human  1110 ISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIF 1174

  Fly  1893 SIMGVQFFGGKFFKCVN-EMGELLPITEVNDKWDCIEQNYT----WINSKITFDHVGMGYLALLQ 1952
            |||||..|.|||:.|:| ...|...|:|||:|.:|....:|    |:|.|:.:|:||:|||:|||
Human  1175 SIMGVNLFAGKFYYCINTTTSERFDISEVNNKSECESLMHTGQVRWLNVKVNYDNVGLGYLSLLQ 1239

  Fly  1953 VATFEGWMEVMADAVDARGVDLQPQREANLYAYIYFVIFIVCGSFFTLNLFIGVIIDNFNMLKKK 2017
            ||||:|||::|..|||:|..:.|||.|.|||.|:||||||:.||||||||||||||||||..|||
Human  1240 VATFKGWMDIMYAAVDSREKEEQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK 1304

  Fly  2018 YEGGVLEMFLTESQKHYYTAMKKLGRKKPQKVIKRPINHFLAMFYDLSNSRRFEIAIFVLIFLNM 2082
            ..|  .::|:||.||.||.||||||.|||||.|.||.|....|.|||...:.|:|.|.:||.|||
Human  1305 LGG--KDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVYDLVTKQAFDITIMILICLNM 1367

  Fly  2083 LTMGIEHYDQPHAVFFILEVSNAFFTTVFGLEAIVKIVGLRYHYFTVPWNVFDFLLVLASIFGIL 2147
            :||.:|..:|......||...|..|..:|..|.::|::.||.:||||.||:|||::|:.||.|:.
Human  1368 VTMMVETDNQSQLKVDILYNINMIFIIIFTGECVLKMLALRQYYFTVGWNIFDFVVVILSIVGLA 1432

  Fly  2148 MEDIMIDLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLGLITFIYA 2212
            :.|::....:||||.||:|:.||||:||||:.|||||.|||||::|||||||||.||.|:.|||:
Human  1433 LSDLIQKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYS 1497

  Fly  2213 ILGMSLFGNVKLQGALDDMVNFQTFGRSMQLLFRLMTSAGWNDVLESLMIQ-PPDCDPFIHG--- 2273
            |.|||.|..||.:..:|||.||:|||.|:..||.:.|||||:.:|..::.. ||||||.:..   
Human  1498 IFGMSNFAYVKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPNLENPGT 1562

  Fly  2274 HTNGNCGHPLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIRWSKY 2338
            ...|:||:|.:.|.:|.|:||||::||:||||||||||||.|.:|....:.|||.||||..|.|:
Human  1563 SVKGDCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKF 1627

  Fly  2339 DPHATQFIHFSQLSDFIASLDPPLGISKPNNVALVSFNLPISKGNKIHCLDILHALVKHVLGHVE 2403
            ||.|||||.:|:||||:.:|..||.|:|||.:.|::.:||:..|:||||||||.||.|.|||...
Human  1628 DPDATQFIAYSRLSDFVDTLQEPLRIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSG 1692

  Fly  2404 ETDNFKQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEKAAKTIQTGWKEYLRRKREKERS--- 2465
            |.|..||..|:   ||....|::...|.:::|...|.:|..|..||..::.:|.::..|:.|   
Human  1693 EMDALKQTMEE---KFMAANPSKVSYEPITTTLKRKHEEVCAIKIQRAYRRHLLQRSMKQASYMY 1754

  Fly  2466 -----NSGDSATQTSSPGGWQSKLSALNFFHLQVSRRGTACSSRASSRKSSRASDASDLSELAGP 2525
                 .|||.|.:       :..|.|.....:.....|.  ||..|..:...|.|       |||
Human  1755 RHSHDGSGDDAPE-------KEGLLANTMSKMYGHENGN--SSSPSPEEKGEAGD-------AGP 1803

  Fly  2526 WLNLPLMLVSGAD 2538
              .:.||.:|.:|
Human  1804 --TMGLMPISPSD 1814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 125/293 (43%)
Ion_trans 687..902 CDD:459842 121/218 (56%)
Ion_trans 1751..2019 CDD:459842 155/274 (57%)
Na_channel_gate 2009..2063 CDD:240441 31/53 (58%)
Ion_trans 2067..2320 CDD:459842 132/256 (52%)
GPHH 2332..2378 CDD:465306 23/45 (51%)
SCN4ANP_000325.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..63 3/35 (9%)
I. /evidence=ECO:0000305 113..454 149/342 (44%)
Ion_trans 130..457 CDD:459842 145/328 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 493..530 16/123 (13%)
II. /evidence=ECO:0000305 560..832 146/278 (53%)
Ion_trans 577..790 CDD:459842 119/215 (55%)
Na_trans_assoc 816..1026 CDD:461936 76/820 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 863..885 5/175 (3%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 930..992 22/200 (11%)
III. /evidence=ECO:0000305 1013..1326 171/314 (54%)
Ion_trans 1030..1304 CDD:459842 153/273 (56%)
Na_channel_gate 1296..1348 CDD:240441 31/53 (58%)
Important for rapid channel inactivation. /evidence=ECO:0000250|UniProtKB:P15390 1310..1312 0/1 (0%)
IV. /evidence=ECO:0000305 1335..1633 152/297 (51%)
Ion_trans 1353..1609 CDD:459842 132/255 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1778..1836 13/48 (27%)

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