DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NaCP60E and SCN1A

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_001159435.1 Gene:SCN1A / 6323 HGNCID:10585 Length:2009 Species:Homo sapiens


Alignment Length:2553 Identity:810/2553 - (31%)
Similarity:1173/2553 - (45%) Gaps:794/2553 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 PRTKASVEDGDVLPRKFEPFPEHMYGKPLEEIDT-FIYEETFCVVSKRFRKNYIHRFTGTKSLFL 108
            |:..:.:|.|..||..:...|..|..:|||::|. :|.::||.|::|   ...|.||:.|.:|::
Human    49 PKPNSDLEAGKNLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNK---GKAIFRFSATSALYI 110

  Fly   109 FYPWSPARRVCVYIATNQFFDYCVMATILFNCIFLAMT---ETVEEAEYIFLAIYSIEMVIKIIA 170
            ..|::|.|::.:.|..:..|...:|.|||.||:|:.|:   :..:..||.|..||:.|.:|||||
Human   111 LTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIA 175

  Fly   171 KGFLLNKYTYLRNPWNWLDFVVITSGYATIGMEVGNLAGLRTFRVLRALKTVSIMPGLKTIINAL 235
            :||.|..:|:||:|||||||.|||..|.|..:::||::.||||||||||||:|::||||||:.||
Human   176 RGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL 240

  Fly   236 LHSFRQLAEVMTLTIFCLMVFALFALQVYMGELRNKCVRQVPTDWTNVSHT-------------- 286
            :.|.::|::||.||:|||.||||..||::||.|||||::..||:.:...|:              
Human   241 IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCIQWPPTNASLEEHSIEKNITVNYNGTLI 305

  Fly   287 -------DWQIWVNDTDNWLYDEDEL-PVLCGNLTGARHCPFEYVCLCVGENPNHGYTNFDNFMW 343
                   ||:.::.|:....:.|..| .:||||.:.|..||..|:|:..|.|||:|||:||.|.|
Human   306 NETVFEFDWKSYIQDSRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSW 370

  Fly   344 SMLTTFQLITLDYWENVYNMVLATCGPMSVSFFTVVVFFGSFYLINLMLAVVALSYEEEAEITNE 408
            :.|:.|:|:|.|:|||:|.:.|...|...:.||.:|:|.||||||||:|||||::|||:.:.|.|
Human   371 AFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLE 435

  Fly   409 ERKK---------DLLDHRDD----------STFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASY 454
            |.::         :.|..:.:          |..|.:||.......:.:...|:.|:      |.
Human   436 EAEQKEAEFQQMIEQLKKQQEAAQQAATATASEHSREPSAAGRLSDSSSEASKLSSK------SA 494

  Fly   455 SKKKTRRKKTKGGKEGGTNGNGNGSNGDD-NKSHSAT----------------------PSPGP- 495
            .:::.||||.|..::.|    |...:.|: .||.|..                      .||.. 
Human   495 KERRNRRKKRKQKEQSG----GEEKDEDEFQKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQS 555

  Fly   496 ---------SPRHSATERPSALTMQAQ-----KQYQQMEQQHKLAKSGSGGSNNPMAPTPKGRIS 546
                     |||.::  |.|..:.:.:     .:....:.:|...:......::...|...|...
Human   556 LLSIRGSLFSPRRNS--RTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERR 618

  Fly   547 FQDSGMGVKNPNML--YPSDYK-------GQLIANSGQPSSNSSGVNR--------ESSQDDSGV 594
            ..:.....::..||  :|::.|       ..:::..|.||..:|.|.:        :.:.||:|.
Human   619 NSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEVIIDKPATDDNGT 683

  Fly   595 VDDHEEQDTTNDMGHVSTVELALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDDLPDR 659
            ..:.|.:...:...|||...|....:..|.:    :||.|..:.|..|.:.            .:
Human   684 TTETEMRKRRSSSFHVSMDFLEDPSQRQRAM----SIASILTNTVEELEES------------RQ 732

  Fly   660 NCDRCVH--------W-CTDYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMSES 715
            .|..|.:        | |:.|  ||:.::.:..||.||..:||||:||||||.|:||||:.|::.
Human   733 KCPPCWYKFSNIFLIWDCSPY--WLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTDH 795

  Fly   716 FRNALDVGNKVFTSIFTFECIVKLMALSK-DFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRG 779
            |.|.|.|||.|||.|||.|..:|::|:.. .:|..||||||..|||.||:::....|:||||||.
Human   796 FNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEGLSVLRS 860

  Fly   780 LRLLRVLKLAQSWTTMKVLLSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTP--EKFDP 842
            .|||||.|||:||.|:.:|:.||.:::||||||||:|.|:::||||:|||||.|.|..  .|...
Human   861 FRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIAS 925

  Fly   843 D-PVPRWNFNDFFHSFMMIFRILCGEWIEPLWDCMRAEEEQGASTCFAIFLPTLVMGNFMVLNLF 906
            | .:|||:.|||||||:::||:|||||||.:||||   |..|.:.|..:|:..:|:||.:|||||
Human   926 DCQLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM---EVAGQAMCLTVFMMVMVIGNLVVLNLF 987

  Fly   907 LALLLNSFNSEELKSKKEEVGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQIVLDAQQ 971
            |||||:||:::.|.:..:: .|.:.|..:::|:...:...:        ||..|..||..:..|:
Human   988 LALLLSSFSADNLAATDDD-NEMNNLQIAVDRMHKGVAYVK--------RKIYEFIQQSFIRKQK 1043

  Fly   972 AHAQTLSHQAAVGLERGDKPGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTIVDGLEY 1036
                                 :|.|.|                       ||.|           
Human  1044 ---------------------ILDEIK-----------------------PLDD----------- 1053

  Fly  1037 DDTGDLPEQIQLQAHPLPPTSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAERRLQHQ 1101
                                                      :|                     
Human  1054 ------------------------------------------LN--------------------- 1055

  Fly  1102 ISSGVSTQQYDSREEATYTESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSRRYGSEE 1166
                                                           |:.||...|.:...|   
Human  1056 -----------------------------------------------NKKDSCMSNHTAEIG--- 1070

  Fly  1167 HDEAFLKYQKSLLTRSPSYRKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSIEQDELL 1231
                                |.||.|...:|.:...            .:|.|:....|::.:.:
Human  1071 --------------------KDLDYLKDVNGTTSGI------------GTGSSVEKYIIDESDYM 1103

  Fly  1232 SQQGNLREELLNCDQKELFQFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMVEHSEFD 1296
            |...|                                        ||..:..|   ..|..|:|:
Human  1104 SFINN----------------------------------------PSLTVTVP---IAVGESDFE 1125

  Fly  1297 NI-IQSFEKELEEIKRSTTSLERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADEVVLPL 1360
            |: .:.|..|        :.||.....|:|.|.:::.:|..|        ||             
Human  1126 NLNTEDFSSE--------SDLEESKEKLNESSSSSEGSTVDI--------GA------------- 1161

  Fly  1361 NPYDSYDLSSVPRRSQSVSAAAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAPFVAME 1425
                                                                             
Human  1162 ----------------------------------------------------------------- 1161

  Fly  1426 AMAVAATSASQAQPNQSPFLRRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIESEKMPR 1490
                                                          |.||:|:            
Human  1162 ----------------------------------------------PVEEQPV------------ 1168

  Fly  1491 KFLHGPDQLRLDSLSLKSTNSYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQISSLKT 1555
                                                               :|            
Human  1169 ---------------------------------------------------VE------------ 1170

  Fly  1556 TPPLAALTEHQQHFHATSIQAAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQSARTE 1620
                                                            |:.||:           
Human  1171 ------------------------------------------------PEETLE----------- 1176

  Fly  1621 SHSSGAADASSALALAMAQKTEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGGRRNSQ 1685
                                                                             
Human  1177 ----------------------------------------------------------------- 1176

  Fly  1686 GAYNDPMTFPSYGATKAAKVPDDCFPQKCYDHFYFRCPWFMSC---MDTQSAKHWTRVRTAVLTV 1747
                                |:.||.:.|...  |:|     |   ::....|.|..:|.....:
Human  1177 --------------------PEACFTEGCVQR--FKC-----CQINVEEGRGKQWWNLRRTCFRI 1214

  Fly  1748 VDTPAFEWFVLVLIFASSITLCFEDINLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGFSKY 1812
            |:...||.|::.:|..||..|.||||.:|:.||:|.:|.:.:..|..||::||:|||:|.|:..|
Human  1215 VEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTY 1279

  Fly  1813 FTSFWTILDFIIVFVSVFSLLIEE--NENLKVLRSLRTLRALRPLRAISRWQGMRIVVNALMYAI 1875
            ||:.|..|||:||.||:.||....  ...|..::|||||||||||||:||::|||:|||||:.||
Human  1280 FTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAI 1344

  Fly  1876 PSIFNVLLVCLVFWLIFSIMGVQFFGGKFFKCVN-EMGELLPITEVNDKWDC---IEQNYT--WI 1934
            |||.|||||||:||||||||||..|.|||:.|:| ..|:...|.:||:..||   ||:|.|  |.
Human  1345 PSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTGDRFDIEDVNNHTDCLKLIERNETARWK 1409

  Fly  1935 NSKITFDHVGMGYLALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAYIYFVIFIVCGSFFT 1999
            |.|:.||:||.|||:|||||||:|||::|..|||:|.|:|||:.|.:||.|:||||||:.|||||
Human  1410 NVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFT 1474

  Fly  2000 LNLFIGVIIDNFNMLKKKYEGGVLEMFLTESQKHYYTAMKKLGRKKPQKVIKRPINHFLAMFYDL 2064
            |||||||||||||..|||:.|  .::|:||.||.||.||||||.|||||.|.||.|.|..|.:|.
Human  1475 LNLFIGVIIDNFNQQKKKFGG--QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDF 1537

  Fly  2065 SNSRRFEIAIFVLIFLNMLTMGIEHYDQPHAVFFILEVSNAFFTTVFGLEAIVKIVGLRYHYFTV 2129
            ...:.|:|:|.:||.|||:||.:|..||...|..||...|..|..:|..|.::|::.||::|||:
Human  1538 VTRQVFDISIMILICLNMVTMMVETDDQSEYVTTILSRINLVFIVLFTGECVLKLISLRHYYFTI 1602

  Fly  2130 PWNVFDFLLVLASIFGILMEDIMIDLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVVSL 2194
            .||:|||::|:.||.|:.:.:::....:||||.||:|:.||||||||||.|||||.|||||::||
Human  1603 GWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSL 1667

  Fly  2195 PALFNIGALLGLITFIYAILGMSLFGNVKLQGALDDMVNFQTFGRSMQLLFRLMTSAGWNDVLES 2259
            |||||||.||.|:.|||||.|||.|..||.:..:|||.||:|||.||..||::.|||||:.:|..
Human  1668 PALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAP 1732

  Fly  2260 LM-IQPPDCDPFIHGHTN------GNCGHPLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQ 2317
            :: .:||||||   ...|      |:||:|.:.|.:|.|:||||:::|:|||||:|||||:.|.:
Human  1733 ILNSKPPDCDP---NKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATE 1794

  Fly  2318 EEEIGIVEDDLEMFYIRWSKYDPHATQFIHFSQLSDFIASLDPPLGISKPNNVALVSFNLPISKG 2382
            |....:.|||.||||..|.|:||.||||:.|.:||.|.|:|:|||.:.:||.:.|::.:||:..|
Human  1795 ESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSG 1859

  Fly  2383 NKIHCLDILHALVKHVLGHVEETDNFKQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEKAAKT 2447
            ::|||||||.|..|.|||...|.|   .|:.||:.:|....|::...:.:::|...|::|.:|..
Human  1860 DRIHCLDILFAFTKRVLGESGEMD---ALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAVI 1921

  Fly  2448 IQTGWKEYLRRKREKERS 2465
            ||..::.:|.::..|:.|
Human  1922 IQRAYRRHLLKRTVKQAS 1939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 122/270 (45%)
Ion_trans 687..902 CDD:459842 119/218 (55%)
Ion_trans 1751..2019 CDD:459842 161/275 (59%)
Na_channel_gate 2009..2063 CDD:240441 32/53 (60%)
Ion_trans 2067..2320 CDD:459842 134/259 (52%)
GPHH 2332..2378 CDD:465306 21/45 (47%)
SCN1ANP_001159435.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..60 3/10 (30%)
I. /evidence=ECO:0000305 110..454 150/343 (44%)
Ion_trans 127..433 CDD:459842 142/305 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 455..529 18/83 (22%)
Na_trans_cytopl 555..718 CDD:463401 27/168 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 584..627 3/42 (7%)
II. /evidence=ECO:0000305 750..1022 141/277 (51%)
Ion_trans 767..980 CDD:459842 117/215 (54%)
Na_trans_assoc 1006..1213 CDD:461936 67/824 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1129..1163 11/173 (6%)
III. /evidence=ECO:0000305 1200..1514 176/315 (56%)
Ion_trans 1217..1492 CDD:459842 159/274 (58%)
Na_channel_gate 1484..1536 CDD:240441 32/53 (60%)
IV. /evidence=ECO:0000305 1523..1821 153/300 (51%)
Ion_trans 1540..1796 CDD:459842 133/258 (52%)
S1-S2 loop of repeat IV. /evidence=ECO:0000250|UniProtKB:A2APX8 1561..1571 4/9 (44%)
S3b-S4 loop of repeat IV. /evidence=ECO:0000250|UniProtKB:A2APX8 1619..1636 4/16 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1986..2009
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.