DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and Scn4a

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_573462.2 Gene:Scn4a / 110880 MGIID:98250 Length:1841 Species:Mus musculus


Alignment Length:2595 Identity:799/2595 - (30%)
Similarity:1132/2595 - (43%) Gaps:896/2595 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DEKAVAKHQVVAYTQRSQVKHENRHIQLVREYGFHPRTKASVEDGDVLPRKFEPFPEHMYGKPLE 74
            :::|:.:...:...::.:::...|            :.::.:|.|..||..:...|..:.|.|||
Mouse    29 EQRAMEEEARLQRNKQMEIEEPER------------KPRSDLEAGKNLPLIYGDPPPEVIGVPLE 81

  Fly    75 EIDTFIYE-ETFCVVSKRFRKNYIHRFTGTKSLFLFYPWSPARRVCVYIATNQFFDYCVMATILF 138
            ::|.:..: :||.|::|   ...|.||:.|.:|::..|:|..|||.:.:..:..|...:|.|||.
Mouse    82 DLDPYYSDKKTFIVLNK---GKAIFRFSATPALYMLSPFSIVRRVAIKVLIHALFSMFIMITILT 143

  Fly   139 NCIFLAMTET---VEEAEYIFLAIYSIEMVIKIIAKGFLLNKYTYLRNPWNWLDFVVITSGYATI 200
            ||:|:.|:..   .::.||.|..||:.|.:||::|:||.::.:|:||:|||||||.|||..|.|.
Mouse   144 NCVFMTMSNPPSWSKDVEYTFTGIYTFESLIKMLARGFCIDDFTFLRDPWNWLDFSVITMAYVTE 208

  Fly   201 GMEVGNLAGLRTFRVLRALKTVSIMPGLKTIINALLHSFRQLAEVMTLTIFCLMVFALFALQVYM 265
            .:::||::.||||||||||||::::||||||:.||:.|.::|::||.||:|||.||||..||::|
Mouse   209 FVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQLFM 273

  Fly   266 GELRNKCVRQVP------------------------------------TDWTNVSHTDWQIWVND 294
            |.||.||||..|                                    ..|.:.|..||:.::||
Mouse   274 GNLRQKCVRWPPPMNDTNTTWYGNDTWYGNDTWYGNDTWYGNDTWNSQESWVSNSTFDWEAYIND 338

  Fly   295 TDNWLYDE---DELPVLCGNLTGARHCPFEYVCLCVGENPNHGYTNFDNFMWSMLTTFQLITLDY 356
            ..|:.:.|   |.|  ||||.:.|.|||..|.|:..|.|||:|||::|.|.|:.|..|:|:|.||
Mouse   339 EGNFYFLEGSNDAL--LCGNSSDAGHCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDY 401

  Fly   357 WENVYNMVLATCGPMSVSFFTVVVFFGSFYLINLMLAVVALSYEEEAEITNEERKKDLLDHRDDS 421
            |||::.:.|...|...:.||.|::|.||||||||:|||||::|.|:.|.|..|      |...:.
Mouse   402 WENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAEQNEATLAE------DQEKEE 460

  Fly   422 TFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASYSKKKTRRKKTKGGK--EGGTNGNGNGSNGDDN 484
            .|.                        .:|..:.|.:...:|.|..:  |||...:|:       
Mouse   461 EFQ------------------------QMLEKFKKHQEELEKAKAAQALEGGEEADGD------- 494

  Fly   485 KSHSATPSPGPSPRHSATERPSALTMQAQKQYQQMEQQHKLAKSGSGGSNNPMAPTPKGRISFQD 549
                        |.||                                                 
Mouse   495 ------------PTHS------------------------------------------------- 498

  Fly   550 SGMGVKNPNMLYPSDYKGQLIANSGQPSSNSSGVNRESSQDDSGVVDDHEEQDTTNDMGHVSTVE 614
                         .|..|.|      .:|...|..|.|...:|.:.|..||.:..          
Mouse   499 -------------KDCNGSL------DTSGEKGPPRPSCSAESAISDAMEELEEA---------- 534

  Fly   615 LALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDDLPDRNCD----RCVH----W--CT 669
                                        ||:               |.    :|.|    |  |.
Mouse   535 ----------------------------HQK---------------CPPWWYKCAHKVLIWNCCA 556

  Fly   670 DYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMSESFRNALDVGNKVFTSIFTFE 734
               .|::|::.:..:|.||..:|.||:||||||.|:||||:.|:|.|.|.|.|||.|||.|||.|
Mouse   557 ---PWVKFKHIILLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLSVGNLVFTGIFTAE 618

  Fly   735 CIVKLMALSK-DFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSWTTMKVL 798
            .::||:|:.. ::|..||||||..|||.||:::....|.||||||..|||||.|||:||.|:.:|
Mouse   619 MVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNML 683

  Fly   799 LSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTP--EKFDPD-PVPRWNFNDFFHSFMMI 860
            :.||.:::||||||||:|.|:::||||:|||||.|.|..  .|...| .:|||:.:||||||:::
Mouse   684 IKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIASDCSLPRWHMHDFFHSFLIV 748

  Fly   861 FRILCGEWIEPLWDCMRAEEEQGASTCFAIFLPTLVMGNFMVLNLFLALLLNSFNSEELKSKKEE 925
            ||||||||||.:||||   |..|.:.|..:||..:|:||.:||||||||||:||:::.|.:..|:
Mouse   749 FRILCGEWIETMWDCM---EVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSSFSADSLAASDED 810

  Fly   926 VGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQIVLDAQQAHAQTLSHQAAVGLERGDK 990
             ||.:.|..:|.|::..|             .||:.|                   .:||     
Mouse   811 -GEMNNLQIAIGRIKWGI-------------AFAKTF-------------------LLGL----- 837

  Fly   991 PGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTIVDGLEYDDTGDLPEQIQLQAHPLPP 1055
                                            ||..:.::.|                       
Mouse   838 --------------------------------LHGKILSLKD----------------------- 847

  Fly  1056 TSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAERRLQHQISSGVSTQQYDSREEATYT 1120
                        :|.:.|                                               
Mouse   848 ------------IMLSLG----------------------------------------------- 853

  Fly  1121 ESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSRRYGSEEHDEAFLKYQKSLLTRSPSY 1185
                                :..|.|.                                      
Mouse   854 --------------------EPGGAGE-------------------------------------- 860

  Fly  1186 RKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSIEQDELLSQQGNLREELLNCDQKELF 1250
                                               |..|..:||                     
Mouse   861 -----------------------------------NGESPPEDE--------------------- 869

  Fly  1251 QFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMVEHSEFDNIIQSFEKELEEIKRSTTS 1315
                                   .:.|..:.|                    .|||::       
Mouse   870 -----------------------KKEPPPEDG--------------------NKELKD------- 884

  Fly  1316 LERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADEVVLPLNPYDSYDLSSVPRRSQSVSA 1380
                               ..|:.|:.:..|.......|.:....|||.:               
Mouse   885 -------------------NHILNHVGLTDGPRSSIEMDHLNFINNPYLT--------------- 915

  Fly  1381 AAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAPFVAMEAMAVAATSASQAQPNQSPFL 1445
                                                ||.|..:.|:..                 
Mouse   916 ------------------------------------IHVPIASEESDL----------------- 927

  Fly  1446 RRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIESEKMPRKFLHGPDQLRLDSLSLKSTN 1510
                                    |:|.||:..:....|..|.|.:.|:..:.      |:.||.
Mouse   928 ------------------------EMPTEEETDTFSEPEDIKKPLQPLYDGNS------SVCSTA 962

  Fly  1511 SYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQISSLKTTPPLAALTEHQQHFHATSIQ 1575
            .|                              :||.                             
Mouse   963 DY------------------------------KPPE----------------------------- 968

  Fly  1576 AAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQSARTESHSSGAADASSALALAMAQK 1640
                                      |.|:                                   
Mouse   969 --------------------------EDPE----------------------------------- 972

  Fly  1641 TEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGGRRNSQGAYNDPMTFPSYGATKAAKV 1705
             ||::                                    .|.:|                 ::
Mouse   973 -EQAE------------------------------------ENPEG-----------------EL 983

  Fly  1706 PDDCFPQKCYDHFYFRCPWFMSCMDTQSAKHWTRVRTAVLTVVDTPAFEWFVLVLIFASSITLCF 1770
            |::||.:.|..    |||.....:.....|.|..:|.|...:|:...||.|::.:|..||..|.|
Mouse   984 PEECFTEACVK----RCPCLYVDISQGRGKMWWTLRRACFKIVEHNWFETFIVFMILLSSGALAF 1044

  Fly  1771 EDINLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGFSKYFTSFWTILDFIIVFVSVFSLLIE 1835
            |||.:::.:.::.:|.:.:..|..||::||:|||:|.||..|||:.|..|||:||.||:.||:..
Mouse  1045 EDIYIEQRRVIQTILEYADKVFTYIFILEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLVAN 1109

  Fly  1836 --ENENLKVLRSLRTLRALRPLRAISRWQGMRIVVNALMYAIPSIFNVLLVCLVFWLIFSIMGVQ 1898
              ....|..::|||||||||||||:||::|||:|||||:.|||||.|||||||:||||||||||.
Mouse  1110 WLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVN 1174

  Fly  1899 FFGGKFFKCVN-EMGELLPITEVNDKWDCIEQNYT----WINSKITFDHVGMGYLALLQVATFEG 1958
            .|.|||:.|:| ...|...|:.||:|.:|....||    |:|.|:.:|:||:|||:|||||||:|
Mouse  1175 LFAGKFYYCINTTTSERFDISVVNNKSECESLMYTGQVRWMNVKVNYDNVGLGYLSLLQVATFKG 1239

  Fly  1959 WMEVMADAVDARGVDLQPQREANLYAYIYFVIFIVCGSFFTLNLFIGVIIDNFNMLKKKYEGGVL 2023
            ||::|..|||:|..:.||..|.|||.|:||||||:.||||||||||||||||||..|||:.|  .
Mouse  1240 WMDIMYAAVDSREKEEQPDYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGG--K 1302

  Fly  2024 EMFLTESQKHYYTAMKKLGRKKPQKVIKRPINHFLAMFYDLSNSRRFEIAIFVLIFLNMLTMGIE 2088
            ::|:||.||.||.||||||.|||||.|.||.|....|.||....:.|:|:|.:||.|||:||.:|
Mouse  1303 DIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVYDFVTKQVFDISIMILICLNMVTMMVE 1367

  Fly  2089 HYDQPHAVFFILEVSNAFFTTVFGLEAIVKIVGLRYHYFTVPWNVFDFLLVLASIFGILMEDIMI 2153
            ..||......||...|..|..||..|.::|:..||::|||:.||:|||::|:.||.|:.:.|::.
Mouse  1368 TDDQSQLKVDILYNINMVFIIVFTGECVLKMFALRHYYFTIGWNIFDFVVVILSIVGLALSDLIQ 1432

  Fly  2154 DLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLGLITFIYAILGMSL 2218
            ...:||||.||:|:.||||:||||:.|||||.|||||::|||||||||.||.|:.|||:|.|||.
Mouse  1433 KYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSN 1497

  Fly  2219 FGNVKLQGALDDMVNFQTFGRSMQLLFRLMTSAGWNDVLESLMIQ-PPDCDPFIHG---HTNGNC 2279
            |..||.:..:|||.||:|||.|:..||.:.|||||:.:|..::.. ||||||.:..   :..|:|
Mouse  1498 FAYVKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTNIKGDC 1562

  Fly  2280 GHPLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIRWSKYDPHATQ 2344
            |:|.:.|.:|.|:||||::||:||||||||||||.|.:|....:.|||.||||..|.|:||.|||
Mouse  1563 GNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDDFEMFYETWEKFDPDATQ 1627

  Fly  2345 FIHFSQLSDFIASLDPPLGISKPNNVALVSFNLPISKGNKIHCLDILHALVKHVLGHVEETDNFK 2409
            ||.:|:||||:.:|..||.|:|||.:.|::.:||:..|:||||||||.||.|.|||...|.|..|
Mouse  1628 FIDYSRLSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALK 1692

  Fly  2410 QLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEKAAKTIQTGWKEYLRRKREKERS--------N 2466
            |..|:   ||....|::...|.:::|...|::|..|..||..::.:|.::..|:.|        .
Mouse  1693 QTMEE---KFMAANPSKVSYEPITTTLKRKQEEVCAIKIQRAYRRHLLQRSVKQASYMYRHSQEG 1754

  Fly  2467 SGDSATQTSSPGGWQSKLSALNFFHLQVS-RRGTACSSRASSRKSSRASDASDLSELAGP 2525
            :||.|.:       :..|.|.....:..| :......|:....|.| ..||...:|:..|
Mouse  1755 NGDGAPE-------KEGLLANTMNKMYGSEKEDNGVQSQGEKEKDS-TEDAGPTTEVTAP 1806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 122/287 (43%)
Ion_trans 687..902 CDD:459842 121/218 (56%)
Ion_trans 1751..2019 CDD:459842 154/274 (56%)
Na_channel_gate 2009..2063 CDD:240441 31/53 (58%)
Ion_trans 2067..2320 CDD:459842 133/256 (52%)
GPHH 2332..2378 CDD:465306 23/45 (51%)
Scn4aNP_573462.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..63 4/42 (10%)
I. /evidence=ECO:0000305 113..448 146/336 (43%)
Ion_trans 130..451 CDD:459842 142/322 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 484..522 14/124 (11%)
II. /evidence=ECO:0000305 554..826 144/278 (52%)
Ion_trans 571..784 CDD:459842 119/215 (55%)
Na_trans_assoc 810..1020 CDD:461936 69/820 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 854..896 13/204 (6%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 925..983 20/278 (7%)
III. /evidence=ECO:0000305 1007..1320 170/314 (54%)
Ion_trans 1024..1298 CDD:459842 152/273 (56%)
Na_channel_gate 1290..1342 CDD:240441 31/53 (58%)
Important for rapid channel inactivation. /evidence=ECO:0000250|UniProtKB:P15390 1304..1306 0/1 (0%)
IV. /evidence=ECO:0000305 1329..1627 152/297 (51%)
Ion_trans 1347..1603 CDD:459842 133/255 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1776..1841 8/32 (25%)

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