DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16896 and tbc-1

DIOPT Version :9

Sequence 1:NP_611973.2 Gene:CG16896 / 37977 FlyBaseID:FBgn0035073 Length:988 Species:Drosophila melanogaster
Sequence 2:NP_510485.2 Gene:tbc-1 / 181592 WormBaseID:WBGene00008974 Length:641 Species:Caenorhabditis elegans


Alignment Length:533 Identity:106/533 - (19%)
Similarity:173/533 - (32%) Gaps:172/533 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   509 WTSLLDL---PCNGPQFQELIKLGAPLLVRNRAKKLK--IRNDHQRRVVIKIWSCLAQWCK---- 564
            |..||.:   |.....:.:|..|.....:||..:||.  ::|   :|.|.::.|.|..:||    
 Worm    43 WMRLLGVSMKPNPLDDWDQLYNLNNQCALRNDCRKLANGLKN---KRSVPELESFLTLYCKKRGM 104

  Fly   565 -------------------VLAHADFMPHLIFPF-VKRMPKNS---LVCFELIATLVLNHFQLCF 606
                               |.|..:|  ::.|.| .|.:||::   ...|:|        |:|..
 Worm   105 DYIKDIGWLTILEKILLLNVPAAHEF--NVFFAFTTKYIPKDTRPDAQIFDL--------FRLLL 159

  Fly   607 EFHPLPPSNYLAMCENILQHCDEQLCKFYKSQEMLPKDFAWPLLSTAFSEVLEEEQWLSLWDNIF 671
            ::|....||:|   |::  ||         |..|..|:  |  .:|.||..:..|....||....
 Worm   160 QYHDPQISNHL---ESL--HC---------SPSMYTKN--W--FATLFSSSMSTESCHELWKLYI 206

  Fly   672 SEPPWFPVFLVVAYNLINREIILRLPDKRSVLFFFHDQNPVDISKLLSKARKLMSK-----CALA 731
            .:...|.||.:....|||.        |..:|....|:....:..|.:.|.:|..:     ..||
 Worm   207 EQGDPFLVFHLAIVFLINA--------KDEILQVKRDEKEKAVQILENMAAQLSVEDVPDFFQLA 263

  Fly   732 LH-----PQRFMTHFSPIPKGV----------YPKFLKYPSEWIDEQEYQAVSL---------IK 772
            ||     |:.....|..|..|.          ..|.|..|...||...:..:|.         .:
 Worm   264 LHYSDKTPECIRKDFHYIIFGANFDEEVKEIQMNKMLCLPIPAIDLTSHDEISSGSVNFFIVDTR 328

  Fly   773 HNQEIDAR--IRHLELEEVKIMERLE-------------TGLKQEEHARRL---KEMERVYQD-- 817
            .|.:.|:.  :....|:.|.|::..|             |..:.|:|...|   .:.|..|.:  
 Worm   329 SNTDFDSGHFVSSFNLDCVAIVDEPEKFEIALNSLECYKTSRRDEDHYLILGYGSDEEDNYMNML 393

  Fly   818 -----------------------------------TIHREEERITCQRKMLLTYQMEVRRRKSEV 847
                                               .:|.|:....|..:..........:.||.|
 Worm   394 IAMFIQKGKLHVSFVQGGYKKLHDCIGQHNRWELIAMHSEDRCELCSSEKASPKWGFFSKMKSAV 458

  Fly   848 ITKLQESEQRRK-----ILEMEKDMDLLMHSIERERRRHNQEMQLAEDEIRNQEM---------- 897
            .......::|.:     |.|.:|..|....|.:|..:|:.|:.....||..:.||          
 Worm   459 SNTSSRMKERVEAVVFPIGEEKKLDDKHADSKQRHGKRYRQQSVFTIDENSDDEMAAGAAVDENP 523

  Fly   898 --ELLAQRYYSDT 908
              |:|..:.:::|
 Worm   524 KEEILLSKEFTET 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16896NP_611973.2 WD40 228..>467 CDD:225201
BAR 766..>952 CDD:299863 35/224 (16%)
SPFH_like <817..909 CDD:302763 22/146 (15%)
tbc-1NP_510485.2 RabGAP-TBC 83..230 CDD:295329 43/185 (23%)
RHOD 321..421 CDD:197731 12/99 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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