DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and hpxb

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_005173505.1 Gene:hpxb / 767787 ZFINID:ZDB-GENE-060929-800 Length:435 Species:Danio rerio


Alignment Length:215 Identity:62/215 - (28%)
Similarity:93/215 - (43%) Gaps:43/215 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 CKDSKVDTLFNSAQGETYAFKGDKYYK-LTTDSV--------EEGYPQLISKGWPGLPGNIDAAF 355
            ||..:.|.:....:|.|:.||||:.:| ||..||        .:.|..|         |::||||
Zfish    40 CKGIEFDAIAPDEKGNTFFFKGDRLWKGLTGASVLSSSVFTELDDYAHL---------GHVDAAF 95

  Fly   356 -------TYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAAMVWGGNGK----- 408
                   ...:...|||...:.:.|....::..||.||.:.|.|:|.||||| |....|:     
Zfish    96 RMHHEHDASSHDHIYFFLDDKVFSYYNYTLEKGYPMEIQQEFPGVPSHLDAA-VECPKGECITDS 159

  Fly   409 IYFFKGSKFWRFDPAKRPPVKASYPKPISNWEGVPNNLDAALKYTNGYTYFFKGDKYYRFHDARF 473
            :.||||::.:.|| .|...||...      |..:| |..:|.::...| |.|.|..:.|||.   
Zfish   160 VLFFKGNEAYSFD-IKTKSVKKKV------WTHLP-NCTSAFRWLEHY-YCFHGHNFTRFHP--- 212

  Fly   474 AVDSATPPFPRPTAHWWFGC 493
            .....|..:|:...:::..|
Zfish   213 VTGEVTGNYPKDARNYFMRC 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668
HX 298..493 CDD:238046 61/213 (29%)
hpxbXP_005173505.1 HX 38..232 CDD:238046 61/213 (29%)
HX 246..433 CDD:413329
Blue background indicates that the domain is not in the aligned region.

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