DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Vtn

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_062029.2 Gene:Vtn / 29169 RGDID:3967 Length:478 Species:Rattus norvegicus


Alignment Length:414 Identity:110/414 - (26%)
Similarity:154/414 - (37%) Gaps:170/414 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VFKLDEDD--------------KAAIQS--------LYGRKTNQLRPTNVYP---ATTQRP---- 287
            ||.:.||:              ...:||        |..|....::||...|   :.||.|    
  Rat    67 VFTMPEDEYWSYDYPEETKNSTSTGVQSENTSLHFNLKPRAEETIKPTTPDPQEQSNTQEPEVGQ 131

  Fly   288 --YSPPKVPLD--------DSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLISK 342
              .:|.....|        :.:|.....|...:...|..:||:|:..|:|...:|..|||:||..
  Rat   132 QGVAPRPDTTDEGTSEFPEEELCSGKPFDAFTDLKNGSLFAFRGEYCYELDETAVRPGYPKLIQD 196

  Fly   343 GWPGLPGNIDAAFTYKN--GKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAAMV--- 402
            .| |:.|.||||||..|  ||||.|||:||||::...:|..||:.|||||:||||::|||:.   
  Rat   197 VW-GIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPDYPRNISEGFSGIPDNVDAALALPA 260

  Fly   403 --WGGNGKIYFFKGSKFWRFDPAKRPPVK------------------------------------ 429
              :.|..::|||||.::|.::..::|..:                                    
  Rat   261 HSYSGRERVYFFKGKQYWEYEFQQQPSQEECEGSSLSAVFEHFALLQRDSWENIFELLFWGRSSD 325

  Fly   430 -ASYPKPIS-NWEGVPNNLDAALK---YTNGYT-------------------------------- 457
             |..|:.|| :|.|||..:|||:.   |..|.|                                
  Rat   326 GAKGPQFISRDWHGVPGKVDAAMAGRIYITGSTFRSVQAKKQKSGRRSRKRYRSRRGRGHSRSRS 390

  Fly   458 -----------------------------------------------YFFKGDKYYRFHDARFAV 475
                                                           |||.||||||.:.....|
  Rat   391 RSMSSRRPSRSVWFSLLSSEESGLGTYNYDYDMNWRIPATCEPIQSVYFFSGDKYYRVNLRTRRV 455

  Fly   476 DSATPPFPRPTAHWWFGCKNTPSS 499
            ||..||:||..|.:|.||   |:|
  Rat   456 DSVNPPYPRSIAQYWLGC---PTS 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 7/37 (19%)
HX 298..493 CDD:238046 90/321 (28%)
VtnNP_062029.2 Somatomedin_B 22..61 CDD:460034
HX 152..473 CDD:238046 90/321 (28%)
Blue background indicates that the domain is not in the aligned region.

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