DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Y50D7A.13

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001299905.1 Gene:Y50D7A.13 / 13188188 WormBaseID:WBGene00194737 Length:194 Species:Caenorhabditis elegans


Alignment Length:25 Identity:9/25 - (36%)
Similarity:14/25 - (56%) Gaps:2/25 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 NSCVF--KCSREGFLPKPGDPTKFY 180
            ||.|:  |.|..|..|:|.:.:|.:
 Worm   239 NSDVYKPKVSTWGVFPRPSNISKTF 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 9/25 (36%)
HX 298..493 CDD:238046
Y50D7A.13NP_001299905.1 ZnMc_MMP 26..193 CDD:239805
Blue background indicates that the domain is not in the aligned region.

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