DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and LOC116408899

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_031753180.1 Gene:LOC116408899 / 116408899 XenbaseID:XB-GENE-29094799 Length:216 Species:Xenopus tropicalis


Alignment Length:214 Identity:101/214 - (47%)
Similarity:125/214 - (58%) Gaps:12/214 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 WVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGS-RWRVKNLTYK 124
            :|..|:|.|.|..:.::|:||.:|:.:|..||||:.|       .|:.....|: ||:...|||:
 Frog    10 FVEKIKEMQKFFRMTVSGKLDRDTLAMMKAPRCGMPD-------VSEYSKFPGNPRWKNTKLTYR 67

  Fly   125 ISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLA 189
            |..|...|.|..||..|.||..:||:...|||.:.|||...|.|||.:..|||.|.|||..|.||
 Frog    68 IQNYTPDLPRQKVDEAIQRALKLWSDVAPLTFRKLTSGTADIMIKFAKRSHGDFDPFDGPHGVLA 132

  Fly   190 HAFFP--VFGGDAHFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEP- 251
            |||.|  ..|||||||:.|.|| .|....|||.||||||||||||.||...:|||.|.|..:.. 
 Frog   133 HAFAPGNGIGGDAHFDEDEKWT-NSAAEYNLFLVAAHEFGHSLGLGHSRDPNALMYPTYHYWNTG 196

  Fly   252 VFKLDEDDKAAIQSLYGRK 270
            .|:|.:||...|||:||||
 Frog   197 NFRLPQDDVKGIQSIYGRK 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223 9/26 (35%)
Peptidase_M10 115..268 CDD:425668 80/155 (52%)
HX 298..493 CDD:238046
LOC116408899XP_031753180.1 PG_binding_1 <8..37 CDD:460223 9/26 (35%)
Peptidase_M10 58..213 CDD:425668 80/155 (52%)
Blue background indicates that the domain is not in the aligned region.

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