DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Rpn8 and Stambp

Sequence 1:NP_001261167.1 Gene:Rpn8 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_612540.1 Gene:Stambp RGDID:619963 Length:424 Species:Rattus norvegicus

Alignment Length:140 Identity:24/141 (17%)
Similarity:49/141 (35%) Gaps:38/141 (27%)


  Fly    14 HPLVLLSVVDHFNRMGKIGNQKRV--VGVLLGCWRSKGVLDVSNSFAV------------PFDED 64
            |.:|..::...|.::......|.:  .|||.|..       :.|.|.:            .:...
  Rat   256 HIVVPRNLCSEFLQLASANTAKGIETCGVLCGKL-------MRNEFTITHVLIPRQNGGPDYCHT 313

  Fly    65 DKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPK----LHQNDIAINELVRRYCPNSVLV 125
            :.::.::|:..|     .|:.        .:||.||.|.    |...|:..:...:...|.|:.:
  Rat   314 ENEEEIFFMQDD-----LGLL--------TLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAI 365

  Fly   126 IIDAKPKDLG 135
            :...|.::.|
  Rat   366 VCSPKFQETG 375

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Rpn8NP_001261167.1 PLN03246 7..308 CDD:215645 24/141 (17%)
MPN_RPN7_8 9..290 CDD:163693 24/141 (17%)
StambpNP_612540.1 Interaction with CHMP3. {ECO:0000250} 1..127
USP8_dimer 12..114 CDD:286108
Interaction with STAM1. {ECO:0000250} 227..231
MPN_AMSH_like 254..424 CDD:163697 24/141 (17%)
JAMM motif. {ECO:0000255|PROSITE-ProRule:PRU01182} 335..348 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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