DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phm and pam

DIOPT Version :10

Sequence 1:NP_477225.1 Gene:Phm / 37823 FlyBaseID:FBgn0283509 Length:365 Species:Drosophila melanogaster
Sequence 2:XP_699436.4 Gene:pam / 570822 ZFINID:ZDB-GENE-090313-384 Length:1010 Species:Danio rerio


Alignment Length:347 Identity:134/347 - (38%)
Similarity:188/347 - (54%) Gaps:38/347 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QNSLYQ-QNLESNSATG----ATASFPFLM------------PNVSPQTPDLYLCTPIKVDPTTT 79
            ||.:|: :..:.||.|.    :....||:|            |.|.|...|.|.|..:.|..:..
Zfish    23 QNHMYRFKRFQENSFTDPNDCSRTRQPFVMSSPYNFSLDIRLPGVVPTESDSYYCMAVPVPTSRE 87

  Fly    80 YYIVGFNPNATMNTAHHMLLYGCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARD 144
            .|||.|.|:|:|:|||||:||||..|..::..|:||        :....|  ...::|:|||||:
Zfish    88 AYIVDFVPHASMDTAHHMILYGCKTPYATQGYWDCG--------KELGTC--RDQAKIMYAWARN 142

  Fly   145 AQKLNLPEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGT-LLLG 208
            |....||:.||||||.::.|.|.|||:||..::.|:|...|.||:.|..|.:|:..:||. |::.
Zfish   143 APPTKLPKDVGFKVGGDTRINYFVLQIHYGDVNNFRDHHRDCSGLSLRMTSKPQPFIAGMYLMMS 207

  Fly   209 TDGQI-PAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGEQEWLQLGKRDP 272
            .|..| |..|..:.:.||...... ::|||:|.|||.|||||||||||..     :|.|:|::.|
Zfish   208 VDTLIPPGKKVTNADIACTYTSSP-MYPFAFRTHTHSLGKVVSGYRVRNG-----QWTQIGRQSP 266

  Fly   273 LTPQMFYNTSNTDPIIEGDKIAVRCTMQST-RHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKF 336
            |.||.||..:||..:.:||.:|.||..... |..||:||.|:.|||||||:|||:|:...:....
Zfish   267 LLPQAFYPATNTIDVKDGDILAARCVFTGEGRTTTTQIGGTSNDEMCNFYIMYYMDNTHAVPYMN 331

  Fly   337 CFSQGAPYYFWSNPDSGLHNIP 358
            |...|:...|.:.|...  |||
Zfish   332 CRDDGSSELFRNIPSEA--NIP 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhmNP_477225.1 Cu2_monooxygen 52..180 CDD:460053 53/139 (38%)
Cu2_monoox_C 200..350 CDD:461021 63/152 (41%)
pamXP_699436.4 Cu2_monooxygen 60..177 CDD:460053 50/126 (40%)
Cu2_monoox_C 198..345 CDD:461021 63/152 (41%)
NHL_PAL_like 494..803 CDD:271328
NHL repeat 508..569 CDD:271328
NHL repeat 575..616 CDD:271328
NHL repeat 627..665 CDD:271328
NHL repeat 676..714 CDD:271328
NHL repeat 723..770 CDD:271328
NHL repeat 776..802 CDD:271328
Blue background indicates that the domain is not in the aligned region.

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