DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phm and PAM

DIOPT Version :10

Sequence 1:NP_477225.1 Gene:Phm / 37823 FlyBaseID:FBgn0283509 Length:365 Species:Drosophila melanogaster
Sequence 2:XP_011541721.1 Gene:PAM / 5066 HGNCID:8596 Length:992 Species:Homo sapiens


Alignment Length:330 Identity:125/330 - (37%)
Similarity:170/330 - (51%) Gaps:33/330 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SNSATGATA----------SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHH 96
            ||...|.|.          :....||.|:|:..|.|.|..:::......:::.|.|.|:|:|.||
Human    39 SNECLGTTRPVVPIDSSDFALDIRMPGVTPKQSDTYFCMSMRIPVDEEAFVIDFKPRASMDTVHH 103

  Fly    97 MLLYGCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNLPEGVGFKVGKN 161
            |||:||..|.::.:.|.|.|          ..|...:|  |:|||||:|....||:||||:||..
Human   104 MLLFGCNMPSSTGSYWFCDE----------GTCTDKAN--ILYAWARNAPPTRLPKGVGFRVGGE 156

  Fly   162 SPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGT-LLLGTDGQIPA-MKTEHLETA 224
            :..||.||||||..|..|:|.:.|.|||.|..|..|:..:||. |::..|..||| .|..:.:.:
Human   157 TGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRLPQPLIAGMYLMMSVDTVIPAGEKVVNSDIS 221

  Fly   225 CEVNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIE 289
            |...... :|.||||||||.|||||||||||..     :|..:|::.|..||.||...:...:..
Human   222 CHYKNYP-MHVFAYRVHTHHLGKVVSGYRVRNG-----QWTLIGRQSPQLPQAFYPVGHPVDVSF 280

  Fly   290 GDKIAVRCTMQST-RHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNPDSG 353
            ||.:|.||..... |...|.||.|:.|||||.|:|||::....::...|....||..|.:.|...
Human   281 GDLLAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEA 345

  Fly   354 LHNIP 358
              |||
Human   346 --NIP 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhmNP_477225.1 Cu2_monooxygen 52..180 CDD:460053 49/127 (39%)
Cu2_monoox_C 200..350 CDD:461021 59/152 (39%)
PAMXP_011541721.1 Cu2_monooxygen 59..168 CDD:460053 46/120 (38%)
Cu2_monoox_C 196..342 CDD:461021 59/151 (39%)
NHL_PAL_like 518..825 CDD:271328
NHL repeat 532..593 CDD:271328
NHL repeat 599..640 CDD:271328
NHL repeat 651..689 CDD:271328
NHL repeat 701..739 CDD:271328
NHL repeat 747..792 CDD:271328
NHL repeat 798..824 CDD:271328
Blue background indicates that the domain is not in the aligned region.

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