DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phm and pamn-1

DIOPT Version :10

Sequence 1:NP_477225.1 Gene:Phm / 37823 FlyBaseID:FBgn0283509 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001367424.1 Gene:pamn-1 / 266833 WormBaseID:WBGene00020556 Length:663 Species:Caenorhabditis elegans


Alignment Length:334 Identity:114/334 - (34%)
Similarity:156/334 - (46%) Gaps:46/334 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NSATGATA------SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLYG 101
            ::||..||      .|...|...|||..|.|:...|:..|.   |:|.|.|.|..:..|||||||
 Worm    20 SAATVRTAKNDDIQKFTIQMIGYSPQKTDDYVAVSIEATPG---YVVAFEPMAHADRVHHMLLYG 81

  Fly   102 CGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNLPEGVGFKVG-KNSPIK 165
            |..|.:.:..|           .....||....|.|:|||||:|..|.||:.|.|.|| :...||
 Worm    82 CTMPASEQGFW-----------RGMETCGWGGGSYILYAWARNAPNLVLPKDVAFSVGHEQDGIK 135

  Fly   166 YLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGTLLL--GT--DGQIPAMKTEHLETACE 226
            |.|||||||  ..|.....|.|||.:..:::....||..:|.  ||  ..|:||.:.   ...|.
 Worm   136 YFVLQVHYA--QPFAGEVHDFSGVTMHISQKKPMNLAAVMLFVSGTPIPPQLPAFQN---NITCM 195

  Fly   227 VNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGD 291
            ......:||||:|.|||.:|::||.:   ...||  .|.::|||:|..||:|....:...|..||
 Worm   196 FESSTPIHPFAFRTHTHAMGRLVSAF---FKHDG--HWTKIGKRNPQWPQLFEGIPSKLMIGSGD 255

  Fly   292 KIAVRCTMQS-TRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGA------PYYFWSN 349
            :::..|...| .::||..:|....|||||||:|::.|    ..:...:.|||      |......
 Worm   256 QMSASCRFDSMDKNRTVNMGAMGVDEMCNFYMMFHYD----AKLDNPYPQGAICAKDYPSKMIDY 316

  Fly   350 PDSGLHNIP 358
            |..|...:|
 Worm   317 PKDGFELLP 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhmNP_477225.1 Cu2_monooxygen 52..180 CDD:460053 51/128 (40%)
Cu2_monoox_C 200..350 CDD:461021 51/160 (32%)
pamn-1NP_001367424.1 Cu2_monooxygen <61..146 CDD:460053 42/97 (43%)
Cu2_monoox_C 168..289 CDD:461021 45/128 (35%)
NHL_PAL_like 355..656 CDD:271328
NHL repeat 360..421 CDD:271328
NHL repeat 427..469 CDD:271328
NHL repeat 480..516 CDD:271328
NHL repeat 524..560 CDD:271328
NHL repeat 568..613 CDD:271328
NHL repeat 627..656 CDD:271328
Blue background indicates that the domain is not in the aligned region.

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