DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and Vsx2

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:XP_017449515.1 Gene:Vsx2 / 171360 RGDID:621215 Length:380 Species:Rattus norvegicus


Alignment Length:105 Identity:52/105 - (49%)
Similarity:63/105 - (60%) Gaps:22/105 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LSLTDKSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFR 168
            |:.|.|.|:||.||.|||.||.||||.|.|.||||:|.||.:|.|..|.|.|:||||||||||:|
  Rat   140 LNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWR 204

  Fly   169 KQE-------------------RHAIYIMKD--KSSKLDG 187
            |:|                   ||:|.:.:.  ||:| ||
  Rat   205 KREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAK-DG 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 37/55 (67%)
Vsx2XP_017449515.1 Homeodomain 153..205 CDD:459649 34/51 (67%)
OAR 319..337 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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