DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fabp and fabp1b.1

DIOPT Version :10

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001019822.1 Gene:fabp1b.1 / 554095 ZFINID:ZDB-GENE-050522-96 Length:128 Species:Danio rerio


Alignment Length:124 Identity:42/124 - (33%)
Similarity:62/124 - (50%) Gaps:14/124 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFK 65
            |||.| ||:|:..|.|.|:||.:|:.....:.|..:....|:...|:.:.:|.|:..|....||.
Zfish     1 MSFTG-KYQLESQEGFVEFMKAVGLPDDMIEKGKDIKSVSEIEENGNQFKVTVTTGSKVLTNSFT 64

  Fly    66 LGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFTD-NELI---TLIPHLT 120
            :|.|.|.|||.|..||:|:..:||||         ..::...|. .||:   ||:..||
Zfish    65 IGQEADIETLTGERVKTIVNREGNKL---------KVVLNRITSITELVDANTLVNTLT 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 FABP_pancrustacea 2..116 CDD:381252 38/117 (32%)
fabp1b.1NP_001019822.1 FABP1 2..127 CDD:381219 41/123 (33%)

Return to query results.
Submit another query.