DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fabp and Pmp2

DIOPT Version :10

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001025476.1 Gene:Pmp2 / 18857 MGIID:102667 Length:132 Species:Mus musculus


Alignment Length:112 Identity:58/112 - (51%)
Similarity:72/112 - (64%) Gaps:2/112 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLG 67
            |:| .:||..||:||:|||.|||||..||:||...|||.::.:||..|:.|.|.||.:.||||||
Mouse     5 FLG-TWKLVSSEHFDDYMKALGVGLANRKLGNLAKPTVIISKKGDYITIRTESAFKNTEISFKLG 68

  Fly    68 VEFDEETLDGRNVKSIITLDGNKLTQEQKGD-KPTTIVREFTDNELI 113
            .||||.|.|.|..|||:||:...|.|.||.| |.|.|.|...|..::
Mouse    69 QEFDETTADNRKAKSIVTLERGSLKQVQKWDGKETAIRRTLLDGRMV 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 FABP_pancrustacea 2..116 CDD:381252 58/112 (52%)
Pmp2NP_001025476.1 FABP8 3..131 CDD:381244 58/112 (52%)

Return to query results.
Submit another query.