Protein Alignment Sxl and shep

DIOPT Version :10

• Sequence 1: NP_001259303.1
• Gene: Sxl / 3772180
• FlyBaseID: FBgn0264270
• Length: 722
• Species: Drosophila melanogaster
• Sequence 2: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 283
• Identity: 80/283 - (28%)
• Similarity: 118/283 - (41%)
• Gaps: 48/283 - (16%)

  Fly    65 SGGNGGSANNLG--GGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMND-----PRASNTNLIVN 122
            |..|..|::|.|  .|.:        :.||:|....:...|.:..:.|.     .:.|.|||.:.
  Fly   192 SNTNSSSSSNTGSQSGTL--------STSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIR 248

  Fly   123 YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKR 187
            .|.|..||::|..:....|.|.:.:.:.|..|....||.||||.....::.|:|.|.|..|:.:.
  Fly   249 GLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQM 313

  Fly   188 LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 252
            .|.....|       ||||:.|||....:..|:.:..|||.:|...||||:.. ..:||.|.|..
  Fly   314 AKQQEQDP-------TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQM-NSKGVGFARME 370

  Fly   253 KREEAQEAISALN-NVIPEGGSQPLSVRLAEEHGK-----------AKAAHFMSQMGV------- 298
            .||:.::.|...| |.|| |...||.|:.|:...|           |:|...:|..|:
  Fly   371 SREKCEQIIQMFNGNTIP-GAKDPLLVKFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPT 434

  Fly   299 -----VPANVPPPPPQPPAHMAA 316
                 |..||..|...|.:..:|
  Fly   435 MQQNGVSVNVGTPIGVPYSRFSA 457

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sxl	NP_001259303.1	sex-lethal	16..297	CDD:273740	73/250 (29%)
shep	NP_001246636.1	RRM_SF	240..321	CDD:473069	25/80 (31%)
		RRM2_MSSP	322..400	CDD:409690	31/79 (39%)