DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG17768 and AT1G72080

Sequence 1:NP_001027236.1 Gene:CG17768 FlyBaseID:FBgn0032240 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_177353.2 Gene:AT1G72080 AraportID:AT1G72080 Length:244 Species:Arabidopsis thaliana

Alignment Length:64 Identity:20/65 (31%)
Similarity:24/65 (37%) Gaps:11/65 (17%)


  Fly   100 NSSQNQRG--GRPGGGNRNNVGNRP--------GQGYG-GAANNAMRLGGAAGQGNRLPHAAKN 152
            |:|...|.  ||.||.|||....|.        |:|.| |.:....|....:..|...|.|..|
plant    26 NTSLRHRYGLGRRGGNNRNRSRGRDDNQSPSNGGRGRGRGRSRRRSRSPSHSNGGREPPFATIN 89

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG17768NP_001027236.1 LSm4 2..77 CDD:212470
AT1G72080NP_177353.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR23338
Phylome 00.000 Not matched by this tool.
11.100

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