DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: CG17768 and SmD1

Sequence 1:NP_001027236.1 Gene:CG17768 FlyBaseID:FBgn0032240 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_524774.1 Gene:SmD1 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster

Alignment Length:121 Identity:39/122 (32%)
Similarity:61/122 (50%) Gaps:12/122 (10%)


  Fly    12 SH-PMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDEV 75
            || .:.:|||||...:|.:...|..||.:|:.|..|.|:.|.. .:....|||:.|:|..:||.:
  Fly    11 SHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNNIRYFILPDSL 74

  Fly    76 -IDMVKEDAQAKSRNRTEMNKNRGGNSSQNQRGGRPGGGNRNNVGNRPGQGYGGAA 130
             ::.:..|...||:.: :.:..|.||..:. ||.|..||.|       |:|.|.|:
  Fly    75 PLETLLIDDTPKSKTK-KKDSGRVGNRGRG-RGARGRGGPR-------GRGRGRAS 121

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG17768NP_001027236.1 LSm4 2..77 CDD:212470 23/67 (34%)
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 26/84 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C107747278
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR23338
RoundUp 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.