DRSC/TRiP Functional Genomics Resources

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Protein Alignment: yellow-d2 and Rgn

Sequence 1:NP_611788.1 Gene:yellow-d2 FlyBaseID:FBgn0034856 Length:412 Species:Drosophila melanogaster
Sequence 2:NP_113734.1 Gene:Rgn RGDID:3560 Length:299 Species:Rattus norvegicus

Alignment Length:186 Identity:38/187 (20%)
Similarity:61/187 (33%) Gaps:42/187 (22%)


  Fly   161 GKVAHQYKMPKRLYKEGVSRFVTPTVELDPHNCDVGFVYMADSIGDGIVVYDVAAQQSWRIENKF 225
            |||.     |...|..|.....|....|:.|...:..::...|:.......|::....|.:::|.
  Rat   105 GKVD-----PAGRYFAGTMAEETAPAVLERHQGSLYSLFPDHSVKKYFDQVDISNGLDWSLDHKI 164

  Fly   226 TYPHPDFGTFTIAGESFQLWDGTVSTTLTPHGLGGRRMMYFHSLSSEWQMAIPLDVVNNGSNW-- 288
            .| :.|..::|:....:.|..|.:|         .||.:|......:....:.:||  .|..|  
  Rat   165 FY-YIDSLSYTVDAFDYDLPTGQIS---------NRRTVYKMEKDEQIPDGMCIDV--EGKLWVA 217

  Fly   289 ----------------RLNDVSAALDQFQLL---GKRGSQ----CVAAAMSESGFL 321
                            ||..|...:|:....   ||..|:    |....||..|.|
  Rat   218 CYNGGRVIRLDPETGKRLQTVKLPVDKTTSCCFGGKDYSEMYVTCARDGMSAEGLL 273

Known Domains:


GeneSequenceDomainRegion External IDIdentity
yellow-d2NP_611788.1 MRJP 122..411 CDD:281074 38/187 (20%)
RgnNP_113734.1 SGL 16..264 CDD:285626 34/176 (19%)
NHL 166..>237 CDD:302697 15/83 (18%)
WD40 repeat 203..239 CDD:293791 7/38 (18%)
NHL repeat 203..237 CDD:271320 6/36 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG3386
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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