Protein Alignment Ppa and SKP2B

DIOPT Version :9

• Sequence 1: NP_001261138.1
• Gene: Ppa / 37602
• FlyBaseID: FBgn0020257
• Length: 562
• Species: Drosophila melanogaster
• Sequence 2: NP_001185415.1
• Gene: SKP2B / 844036
• AraportID: AT1G77000
• Length: 360
• Species: Arabidopsis thaliana
• Alignment Length: 403
• Identity: 104/403 - (25%)
• Similarity: 161/403 - (39%)
• Gaps: 114/403 - (28%)

  Fly   144 VEGTHIS---NLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKRSSPSL 205
            :||..||   ::..|||.:|...:..|.:..|:.:|:.||||
plant    20 MEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGWRDA----------------------- 61

  Fly   206 FNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSL 270
                |..|:.::.:...::::..|||                       :.:.....|:||.|..
plant    62 ----VSLGLTRLSLSWCKKNMNSLVL-----------------------SLAPKFVKLQTLVLRQ 99

  Fly   271 CK-QITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHL 334
            .| |:.|.::..||.|...|:.|:|.....||:..|..:|.|...|..|||..|...||..:.||
plant   100 DKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHL 164

  Fly   335 AGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV-SVTDSGLKHLA-RMP 397
            ..|.|:                                 ||.:||..|| :|:|:.|:.:. ...
plant   165 TRFCRK---------------------------------LKILNLCGCVEAVSDNTLQAIGENCN 196

  Fly   398 KLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQ-I 461
            :|:.|||..|:||||.|:..|..|...:.:||:..|..|:|:::..:|.....||||.|..|: |
plant   197 QLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNI 261

  Fly   462 TDHGMLKIA----KALHE--------------LENLNIGQCSRITDKGLQTLAEDLTNLKT---- 504
            ||..|..:|    |..||              |.:|||.||:.:|...:|.:.:....|.|
plant   262 TDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGR 326

  Fly   505 --IDLYGCTQLSS 515
              :.:.||..|.|
plant   327 HSLVMSGCLNLQS 339

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ppa	NP_001261138.1	F-box-like	149..190	CDD:289689	13/43 (30%)
		AMN1	<226..>334	CDD:187754	28/108 (26%)
		leucine-rich repeat	236..256	CDD:275381	0/19 (0%)
		leucine-rich repeat	263..288	CDD:275381	10/25 (40%)
		leucine-rich repeat	289..314	CDD:275381	8/24 (33%)
		leucine-rich repeat	315..347	CDD:275381	11/31 (35%)
		AMN1	347..524	CDD:187754	55/196 (28%)
		leucine-rich repeat	348..373	CDD:275381	0/24 (0%)
		leucine-rich repeat	374..398	CDD:275381	9/25 (36%)
		leucine-rich repeat	399..424	CDD:275381	12/24 (50%)
		leucine-rich repeat	425..450	CDD:275381	6/24 (25%)
		leucine-rich repeat	451..475	CDD:275381	12/28 (43%)
		leucine-rich repeat	476..501	CDD:275381	8/24 (33%)
SKP2B	NP_001185415.1	F-box	28..63	CDD:395521	11/61 (18%)
		leucine-rich repeat	66..91	CDD:275381	3/47 (6%)
		leucine-rich repeat	92..118	CDD:275381	10/25 (40%)
		AMN1	<115..264	CDD:187754	55/181 (30%)
		leucine-rich repeat	119..144	CDD:275381	8/24 (33%)
		leucine-rich repeat	145..170	CDD:275381	10/24 (42%)
		leucine-rich repeat	171..197	CDD:275381	9/25 (36%)
		leucine-rich repeat	198..223	CDD:275381	12/24 (50%)
		leucine-rich repeat	224..249	CDD:275381	6/24 (25%)
		leucine-rich repeat	250..272	CDD:275381	11/21 (52%)
		leucine-rich repeat	294..319	CDD:275381	8/24 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1947
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810